Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   ACM67E_RS10275 Genome accession   NZ_CP181244
Coordinates   2229712..2230953 (-) Length   413 a.a.
NCBI ID   WP_416191344.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2224712..2235953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS10255 (ACM67E_10255) - 2227230..2227793 (-) 564 WP_416191340.1 OmpA family protein -
  ACM67E_RS10260 (ACM67E_10260) yacG 2228049..2228234 (-) 186 WP_416191341.1 DNA gyrase inhibitor YacG -
  ACM67E_RS10265 (ACM67E_10265) coaE 2228237..2228845 (-) 609 WP_416191342.1 dephospho-CoA kinase -
  ACM67E_RS10270 (ACM67E_10270) pilD 2228847..2229710 (-) 864 WP_416191343.1 prepilin peptidase Machinery gene
  ACM67E_RS10275 (ACM67E_10275) pilG 2229712..2230953 (-) 1242 WP_416191344.1 type II secretion system F family protein Machinery gene
  ACM67E_RS10280 (ACM67E_10280) pilF 2231025..2232704 (-) 1680 WP_416191345.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACM67E_RS10290 (ACM67E_10290) - 2233367..2233933 (+) 567 WP_416191346.1 hypothetical protein -
  ACM67E_RS10295 (ACM67E_10295) - 2233979..2234455 (-) 477 WP_416191347.1 YchJ family protein -
  ACM67E_RS10300 (ACM67E_10300) - 2234611..2235498 (+) 888 WP_416191348.1 RnfABCDGE type electron transport complex subunit B -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45725.04 Da        Isoelectric Point: 10.0310

>NTDB_id=1099473 ACM67E_RS10275 WP_416191344.1 2229712..2230953(-) (pilG) [Neisseria sp. CCUG12390]
MAQAEQKKGMFAQKSKGKRFTFEGKNTNTDQIVRGEVVAKDEEEARKKLQRRGIRPLRISKVKAVRKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHSNPSMTQMLMQIRADVEQGSALGQSFAKHPKYFDRFYCNLVSAGEAGGVLEGLLDKL
AVYKEKTQAIKKKVKTALTYPISIVVVAVVLMFVMMMFVLPAFKEVYSGMGAELPWLTQVVMNISDLFVAYGWIMIIGLI
LIIFGLYKLHQKSPAFQKRIDAMMLKLPIFGAIVRKATIARWSRTTSTLFAAGVPLVEVLESVAGASGNILYEEATQDIR
AKVTQGLSLTSSMQTTELFPNMVIQMAAIGEESGSLDDMLNKAAEFYEDEVDNAVAQLSSLMEPIIMVVLGSLIGVLLVA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1099473 ACM67E_RS10275 WP_416191344.1 2229712..2230953(-) (pilG) [Neisseria sp. CCUG12390]
ATGGCTCAAGCAGAGCAGAAAAAGGGTATGTTCGCCCAAAAGAGCAAAGGTAAACGTTTTACATTCGAAGGTAAAAATAC
CAATACCGATCAAATCGTCCGTGGCGAAGTGGTCGCAAAAGACGAAGAAGAGGCGCGTAAAAAGCTTCAGCGCCGTGGAA
TCCGTCCGCTGCGTATCAGTAAAGTCAAAGCCGTGCGCAAACGCCGTATTACGCAGGAAGACATTACTGTATTCACCCGG
CAACTGGCTACCATGATGAAAGCCGGACTGCCTTTAATGCAGGCTTTTGAAATTGTGGCACGCGGCCATTCCAATCCTTC
TATGACTCAAATGCTGATGCAAATCCGTGCAGATGTCGAGCAAGGTAGTGCATTGGGTCAATCATTCGCCAAGCACCCTA
AATATTTCGACCGTTTTTACTGTAATTTGGTTTCTGCAGGCGAAGCCGGCGGTGTATTGGAAGGGTTGCTGGACAAATTG
GCTGTTTATAAAGAGAAAACTCAAGCCATTAAGAAAAAAGTCAAAACTGCGCTGACCTATCCGATTTCGATTGTTGTGGT
GGCCGTAGTGTTGATGTTTGTGATGATGATGTTTGTACTTCCTGCTTTTAAGGAGGTATATAGCGGTATGGGGGCCGAAC
TGCCTTGGTTGACGCAAGTGGTCATGAATATTTCCGATTTATTCGTTGCTTACGGTTGGATCATGATCATTGGTTTGATT
CTGATTATTTTCGGCCTTTATAAATTGCATCAGAAATCACCTGCTTTCCAAAAGCGTATTGACGCAATGATGCTGAAACT
GCCGATTTTCGGTGCGATTGTAAGAAAAGCGACTATTGCCCGCTGGTCGCGCACGACTTCTACCTTATTCGCCGCAGGTG
TGCCGCTGGTAGAAGTGCTGGAATCGGTTGCAGGAGCTTCGGGTAACATCCTTTATGAAGAAGCCACACAAGACATCCGT
GCCAAAGTTACTCAAGGTTTGTCGCTGACTTCCAGCATGCAGACGACCGAACTCTTCCCCAATATGGTTATCCAGATGGC
CGCTATCGGTGAAGAATCCGGTTCTTTGGATGACATGCTGAATAAAGCCGCAGAGTTCTACGAAGATGAAGTCGACAATG
CCGTTGCCCAATTATCGTCATTGATGGAGCCGATTATCATGGTGGTGTTGGGTTCGTTAATCGGTGTCTTATTGGTGGCT
ATGTATCTGCCGTTGTTCAACTTGGGTAACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

71.712

97.579

0.7
  pilG Neisseria meningitidis 44/76-A

70.968

97.579

0.692
  pilC Legionella pneumophila strain ERS1305867

48.363

96.126

0.465
  pilC Acinetobacter baumannii D1279779

46.985

96.368

0.453
  pilC Pseudomonas stutzeri DSM 10701

45.567

98.305

0.448
  pilC Acinetobacter baylyi ADP1

44.975

96.368

0.433
  pilC Vibrio cholerae strain A1552

40.75

96.852

0.395

Multiple sequence alignment