Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACM67E_RS10270 Genome accession   NZ_CP181244
Coordinates   2228847..2229710 (-) Length   287 a.a.
NCBI ID   WP_416191343.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2223847..2234710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS10220 (ACM67E_10220) - 2224033..2224362 (-) 330 WP_416191338.1 hypothetical protein -
  ACM67E_RS10225 (ACM67E_10225) - 2224453..2226435 (+) 1983 WP_416191339.1 cation:proton antiporter -
  ACM67E_RS10255 (ACM67E_10255) - 2227230..2227793 (-) 564 WP_416191340.1 OmpA family protein -
  ACM67E_RS10260 (ACM67E_10260) yacG 2228049..2228234 (-) 186 WP_416191341.1 DNA gyrase inhibitor YacG -
  ACM67E_RS10265 (ACM67E_10265) coaE 2228237..2228845 (-) 609 WP_416191342.1 dephospho-CoA kinase -
  ACM67E_RS10270 (ACM67E_10270) pilD 2228847..2229710 (-) 864 WP_416191343.1 prepilin peptidase Machinery gene
  ACM67E_RS10275 (ACM67E_10275) pilG 2229712..2230953 (-) 1242 WP_416191344.1 type II secretion system F family protein Machinery gene
  ACM67E_RS10280 (ACM67E_10280) pilF 2231025..2232704 (-) 1680 WP_416191345.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACM67E_RS10290 (ACM67E_10290) - 2233367..2233933 (+) 567 WP_416191346.1 hypothetical protein -
  ACM67E_RS10295 (ACM67E_10295) - 2233979..2234455 (-) 477 WP_416191347.1 YchJ family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31315.33 Da        Isoelectric Point: 8.2181

>NTDB_id=1099472 ACM67E_RS10270 WP_416191343.1 2228847..2229710(-) (pilD) [Neisseria sp. CCUG12390]
MLEIWNALVPFVVPLSVVAGLLIGSFLNVVIYRVPVMMERGWTQFAKEHLNLELTAEEQAPFTLSKPDSRCPKCHAPVKA
WQNIPIVSYLLLGGKCGSCKTPISIRYPLVELLTGVLFGIVAWQYGWSWLTFGGLVFTAMLVALTFIDYDTQYLPDSLTL
PLVWLGLLYNLNGAFTTLQSAVLGAVCGYMSLWLLCYVYKLLTGKIGMGGGDFKLLAALGAWLGVGVLPVLVFTAALIGI
VGALISRVGKGQQFAFGPSLAVAGWIIFIANQPIHELIQWWLGKSGF

Nucleotide


Download         Length: 864 bp        

>NTDB_id=1099472 ACM67E_RS10270 WP_416191343.1 2228847..2229710(-) (pilD) [Neisseria sp. CCUG12390]
ATGCTGGAAATTTGGAATGCCTTGGTTCCGTTTGTTGTGCCGTTATCCGTTGTTGCAGGTTTATTGATCGGCAGTTTTCT
GAATGTGGTCATTTACCGTGTTCCGGTAATGATGGAGCGCGGCTGGACGCAGTTTGCCAAAGAACATTTAAATTTGGAAT
TGACTGCGGAAGAGCAAGCCCCGTTCACTTTATCCAAACCCGATTCGCGCTGCCCGAAATGTCACGCTCCTGTGAAAGCC
TGGCAGAATATTCCGATTGTGAGTTATTTACTGTTGGGCGGTAAATGCGGTTCATGTAAAACACCCATCAGCATCCGCTA
TCCTTTGGTCGAATTACTCACCGGCGTGTTATTCGGTATCGTGGCGTGGCAATACGGCTGGTCGTGGCTTACATTCGGCG
GGTTGGTTTTTACCGCCATGCTGGTCGCACTGACCTTTATCGACTACGATACCCAATACCTGCCCGACTCTTTGACGCTG
CCGCTGGTGTGGTTGGGCTTGCTGTATAACTTGAACGGTGCGTTTACGACACTGCAGTCGGCGGTATTGGGCGCAGTTTG
CGGTTATATGAGTTTGTGGTTGCTGTGTTACGTCTATAAACTGTTAACCGGTAAAATCGGCATGGGCGGCGGCGACTTTA
AATTATTGGCCGCACTGGGCGCATGGCTGGGCGTCGGTGTATTGCCGGTATTGGTGTTCACGGCGGCCTTGATCGGCATT
GTCGGTGCGCTCATATCACGCGTCGGCAAAGGGCAGCAGTTTGCATTCGGTCCGAGTTTGGCCGTGGCAGGGTGGATTAT
TTTTATCGCCAACCAGCCGATTCATGAGTTGATTCAATGGTGGTTGGGCAAATCAGGATTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-242)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

72.202

96.516

0.697
  pilD Acinetobacter nosocomialis M2

49.237

91.289

0.449
  pilD Acinetobacter baumannii D1279779

48.473

91.289

0.443
  pilD Vibrio cholerae strain A1552

44.681

98.258

0.439
  pilD Vibrio campbellii strain DS40M4

44.364

95.819

0.425

Multiple sequence alignment