Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACM660_RS18000 Genome accession   NZ_CP181170
Coordinates   3805566..3807743 (-) Length   725 a.a.
NCBI ID   WP_005201350.1    Uniprot ID   -
Organism   Acinetobacter sp. SEK541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3800566..3812743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS17985 (ACM660_17985) - 3803000..3803863 (-) 864 WP_005201345.1 hypothetical protein -
  ACM660_RS17990 (ACM660_17990) aroB 3803883..3804965 (-) 1083 WP_005201347.1 3-dehydroquinate synthase -
  ACM660_RS17995 (ACM660_17995) aroK 3804986..3805546 (-) 561 WP_005201348.1 shikimate kinase AroK -
  ACM660_RS18000 (ACM660_18000) pilQ 3805566..3807743 (-) 2178 WP_005201350.1 type IV pilus secretin PilQ family protein Machinery gene
  ACM660_RS18005 (ACM660_18005) pilP 3807760..3808287 (-) 528 WP_005201352.1 pilus assembly protein PilP Machinery gene
  ACM660_RS18010 (ACM660_18010) comO 3808290..3809033 (-) 744 WP_005201354.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACM660_RS18015 (ACM660_18015) pilN 3809030..3809680 (-) 651 WP_005201357.1 PilN domain-containing protein Machinery gene
  ACM660_RS18020 (ACM660_18020) comM 3809680..3810738 (-) 1059 WP_004803903.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 78838.71 Da        Isoelectric Point: 8.1595

>NTDB_id=1099398 ACM660_RS18000 WP_005201350.1 3805566..3807743(-) (pilQ) [Acinetobacter sp. SEK541]
MKKQFKDSLFGEAKTMNHAFRQFSMGAIAIAVMQVASAQVSMTNIVPMSLGDQGTEIRVMFNGLPPQPQAYQLEQPARLI
LDFDKSQQGLKQNSIPVSTAEASSIEVASDDQRSRVIVNLKDAGAFTTRVEGNTFVLKINSAKPAAINTPTAAARQVQQG
VSNIGFQRGNQGEGLVVIDLLGNNTPVDVQQQGSKIVVRTAGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQS
AGSYEYMAYQAENKLTISLKRPIDNSPVKAKTQMYTGNKISLDFQDIEVRRVLQLLADFTSINMVAADTVQGNITLRLKD
VPWDQALDIVLKTKNLDKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPIQTEYIKLSYSKAADILKLIEDARDSKG
AIGNGTTNTNSLALESLLSSRGSAVADTRTNTLIINDTAQNIDKIRKMVDLLDVSVKQVMIEARIVSASTDFTREMGVKW
GILSQGISNNNDLLVGGSDKTLWNLRDPKKNSDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAV
QADGYGEVISTPKVMTADKQPAKIESGTKIPYASSSGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSPSN
PTPTGQLTINKNSIDTNVLVDNGETVVLGGIFEQENINSQTKVPFLGDIPYLGKLFRRERKTDNKRELLIFVTPRIVNDT
LTRNH

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=1099398 ACM660_RS18000 WP_005201350.1 3805566..3807743(-) (pilQ) [Acinetobacter sp. SEK541]
ATGAAAAAACAGTTTAAAGATTCTTTATTTGGGGAAGCGAAGACCATGAATCATGCATTCCGTCAATTTTCTATGGGTGC
GATTGCGATTGCGGTGATGCAAGTGGCATCAGCGCAAGTGAGTATGACCAATATCGTACCAATGAGTTTGGGTGATCAGG
GCACGGAAATTCGTGTGATGTTTAATGGCCTTCCACCACAACCGCAAGCTTATCAACTTGAACAACCTGCTCGCTTGATT
CTTGACTTTGATAAGTCACAACAGGGTCTAAAGCAAAACTCGATTCCAGTATCAACCGCTGAAGCGAGTTCGATTGAGGT
TGCATCGGATGATCAGCGTTCCCGTGTGATTGTGAATTTAAAAGATGCGGGTGCATTCACAACACGTGTTGAAGGTAATA
CCTTTGTTCTTAAAATTAACTCAGCCAAACCTGCTGCGATAAATACACCTACTGCCGCTGCGCGTCAGGTACAGCAAGGC
GTTTCCAATATTGGTTTCCAAAGAGGCAACCAAGGTGAAGGCTTGGTTGTGATTGATTTGCTGGGGAATAACACCCCTGT
GGATGTACAACAACAAGGCAGTAAAATTGTGGTGCGTACAGCAGGGAATAAAATTCCAACACATTTAGCCCGTCGTTTAA
ATACCAATGATTTTGCGACCCCTGTTGCCAGCATTGATGCTTATAATGATAAAGGCAATGGCGTGATTACCATTCAATCT
GCGGGCAGCTATGAATATATGGCCTATCAGGCAGAGAATAAGCTCACTATTAGTCTGAAACGCCCTATAGATAACTCTCC
AGTCAAAGCCAAGACACAAATGTATACCGGGAATAAAATCTCTTTAGATTTCCAAGATATTGAAGTGCGTCGAGTGTTAC
AACTATTGGCTGATTTTACCAGTATTAATATGGTGGCAGCAGATACGGTACAAGGCAATATCACACTGCGTCTTAAGGAT
GTGCCATGGGATCAGGCTCTCGATATTGTGCTCAAAACTAAAAATTTGGATAAACGCCGTAATGGCAATGTAATCTGGAT
TGCACCTGTTTCTGAACTGATTAAGGCGGAAGAAGAAGAAGCCAAAGCGATTGCGCAAAGTGTGAAACTAGCACCGATTC
AAACCGAATATATTAAATTAAGCTATTCTAAAGCTGCCGATATCTTAAAATTGATTGAGGATGCTCGTGATAGTAAAGGG
GCGATAGGAAATGGAACAACAAATACGAACTCTTTAGCTTTGGAAAGTTTATTGAGTTCACGAGGCAGTGCAGTTGCTGA
TACCCGTACCAATACCTTGATTATTAATGATACGGCTCAGAATATTGATAAAATCCGTAAAATGGTGGATTTACTCGATG
TTTCTGTTAAGCAAGTCATGATTGAAGCACGGATTGTCAGCGCCAGTACCGATTTTACCCGAGAAATGGGGGTGAAGTGG
GGGATTTTATCTCAAGGGATTAGTAATAATAATGACCTGTTAGTCGGTGGTAGTGATAAAACACTCTGGAATTTACGAGA
TCCGAAAAAGAATAGTGATACAGGTGGCTGGAAATATGAGATCGAACGTCCAGATAATCTGAATGTGGATTTAGGTGCCG
TCACGCCTGGTGCAAGTCGTATTGCTTTCGGTTTGATTAGTTTATCTGACTTTATGTTGGATCTCGAGTTATCTGCTGTA
CAAGCGGATGGTTATGGTGAAGTGATTTCAACACCAAAAGTCATGACTGCAGATAAGCAACCTGCAAAAATTGAATCGGG
GACTAAAATTCCATACGCATCTTCTTCGGGGGGAGGCGCGAATGCGGTGCCGAAAACCGAGTTTATTGATGCGACTTTAA
GTCTAGATGTTACCCCAAGTATTACGCCTGAGGGTAAAGTCATGATGAAGTTGAATATTACTAAGGATTCACCAAGTAAC
CCAACACCAACAGGACAATTGACAATTAATAAAAATTCAATTGATACCAATGTTTTGGTTGATAATGGTGAAACGGTGGT
TCTCGGCGGTATTTTCGAACAAGAGAATATTAATTCACAGACAAAGGTACCTTTCTTAGGGGATATTCCTTATTTAGGTA
AATTATTCCGTAGAGAGCGCAAAACAGATAATAAACGTGAACTGCTTATTTTTGTGACGCCGAGAATTGTTAATGACACT
TTGACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(307-349)

AMIN domain (AMIN)

(52-135)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-458)

Bacterial type II and III secretion system protein (Secretin)

(559-717)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.895

99.862

0.738
  pilQ Acinetobacter baumannii strain A118

73.757

99.862

0.737
  comQ Acinetobacter baylyi ADP1

70.556

99.31

0.701
  pilQ Pseudomonas aeruginosa PAK

41.499

95.724

0.397

Multiple sequence alignment