Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACM660_RS18010 Genome accession   NZ_CP181170
Coordinates   3808290..3809033 (-) Length   247 a.a.
NCBI ID   WP_005201354.1    Uniprot ID   -
Organism   Acinetobacter sp. SEK541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3803290..3814033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS17990 (ACM660_17990) aroB 3803883..3804965 (-) 1083 WP_005201347.1 3-dehydroquinate synthase -
  ACM660_RS17995 (ACM660_17995) aroK 3804986..3805546 (-) 561 WP_005201348.1 shikimate kinase AroK -
  ACM660_RS18000 (ACM660_18000) pilQ 3805566..3807743 (-) 2178 WP_005201350.1 type IV pilus secretin PilQ family protein Machinery gene
  ACM660_RS18005 (ACM660_18005) pilP 3807760..3808287 (-) 528 WP_005201352.1 pilus assembly protein PilP Machinery gene
  ACM660_RS18010 (ACM660_18010) comO 3808290..3809033 (-) 744 WP_005201354.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACM660_RS18015 (ACM660_18015) pilN 3809030..3809680 (-) 651 WP_005201357.1 PilN domain-containing protein Machinery gene
  ACM660_RS18020 (ACM660_18020) comM 3809680..3810738 (-) 1059 WP_004803903.1 pilus assembly protein PilM Machinery gene
  ACM660_RS18025 (ACM660_18025) ponA 3810901..3813495 (+) 2595 WP_005201359.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27587.13 Da        Isoelectric Point: 4.7367

>NTDB_id=1099400 ACM660_RS18010 WP_005201354.1 3808290..3809033(-) (comO) [Acinetobacter sp. SEK541]
MKLDKSDDLNQDTVAVKKKKMTVDQFFQQFNTLDMNNYGSWPLSVKITCWIFVFLAVAALGYFVVIKSQLESIANAEAQE
QSLLNEFKEKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLESEVKQEFFIEQP
ISIDATGDYHAFGAFVTGIAALPRIVTLHDFTVEATTDNQKKSDIPVVNYTVKAKTYRYVGADEQTNNAASAGTAQAATT
PPAQGGK

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1099400 ACM660_RS18010 WP_005201354.1 3808290..3809033(-) (comO) [Acinetobacter sp. SEK541]
ATGAAGTTAGATAAATCGGATGATTTAAATCAAGACACCGTTGCTGTGAAGAAAAAGAAAATGACGGTAGATCAATTCTT
CCAGCAATTTAATACGCTGGATATGAATAACTATGGTAGTTGGCCATTATCGGTCAAAATTACCTGCTGGATTTTTGTTT
TCTTGGCGGTTGCAGCATTGGGTTATTTTGTGGTGATTAAATCTCAGCTTGAATCAATTGCAAATGCCGAAGCTCAAGAA
CAAAGCTTGTTGAATGAGTTTAAAGAAAAAGATTCAAAATTGCGTAATCTGCAACAATATCAAGCGCAACTGCAAGAAAT
GGAAGCTAACTTTAACCAACAGTTAGAGCAATTGCCTAAAGAGACTGAAATTCCAAGCTTGGTTGAGGATATTAACTTAA
CCGGTGTGAATTCAGGGTTGAAATTTAAAAATATTCGTCTTGAGAGTGAAGTTAAGCAAGAATTCTTTATTGAACAGCCA
ATCAGTATTGATGCGACAGGCGATTACCATGCTTTTGGTGCCTTTGTGACAGGCATTGCGGCTTTGCCACGTATCGTGAC
CTTGCATGATTTTACGGTTGAAGCAACAACAGATAACCAGAAGAAATCTGATATTCCTGTGGTGAACTATACCGTTAAAG
CAAAAACATATCGTTATGTTGGGGCGGATGAGCAAACAAATAATGCTGCAAGTGCTGGTACAGCGCAAGCAGCAACTACT
CCACCTGCGCAAGGAGGAAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

73.171

99.595

0.729
  pilO Acinetobacter baumannii D1279779

71.837

99.19

0.713

Multiple sequence alignment