Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACM660_RS18015 Genome accession   NZ_CP181170
Coordinates   3809030..3809680 (-) Length   216 a.a.
NCBI ID   WP_005201357.1    Uniprot ID   N9T9R8
Organism   Acinetobacter sp. SEK541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3804030..3814680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS17995 (ACM660_17995) aroK 3804986..3805546 (-) 561 WP_005201348.1 shikimate kinase AroK -
  ACM660_RS18000 (ACM660_18000) pilQ 3805566..3807743 (-) 2178 WP_005201350.1 type IV pilus secretin PilQ family protein Machinery gene
  ACM660_RS18005 (ACM660_18005) pilP 3807760..3808287 (-) 528 WP_005201352.1 pilus assembly protein PilP Machinery gene
  ACM660_RS18010 (ACM660_18010) comO 3808290..3809033 (-) 744 WP_005201354.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACM660_RS18015 (ACM660_18015) pilN 3809030..3809680 (-) 651 WP_005201357.1 PilN domain-containing protein Machinery gene
  ACM660_RS18020 (ACM660_18020) comM 3809680..3810738 (-) 1059 WP_004803903.1 pilus assembly protein PilM Machinery gene
  ACM660_RS18025 (ACM660_18025) ponA 3810901..3813495 (+) 2595 WP_005201359.1 penicillin-binding protein PBP1a -
  ACM660_RS18030 (ACM660_18030) - 3813511..3814329 (-) 819 WP_005201360.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24008.36 Da        Isoelectric Point: 6.9919

>NTDB_id=1099401 ACM660_RS18015 WP_005201357.1 3809030..3809680(-) (pilN) [Acinetobacter sp. SEK541]
MAKINLLPWRDELREQRKKQFVAFCVGVAALGVASVFSGWMYFDHKLNDQEQANQLIVSTNQNLDTQLKALDGLQERRNA
IIERMKLIQGLQGQRPVTVRLVDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
VDENKNKDKTASSLVPRVEENYGSFVVTVDLGEIGTTAEAAPTSDVAASGAVGVTK

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1099401 ACM660_RS18015 WP_005201357.1 3809030..3809680(-) (pilN) [Acinetobacter sp. SEK541]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAAAGAAAGAAACAGTTTGTCGCATTTTGTGTTGG
GGTTGCTGCATTAGGGGTTGCATCAGTTTTTTCGGGGTGGATGTATTTTGATCATAAATTGAATGATCAGGAACAAGCCA
ATCAACTGATTGTGAGTACCAACCAGAATTTAGATACCCAATTAAAAGCATTGGATGGTTTACAAGAACGACGTAATGCG
ATTATTGAACGCATGAAACTGATTCAAGGTTTACAAGGACAACGTCCTGTGACGGTACGTTTGGTTGATGAGTTGGTACG
GGTTACTCCTCCAACTATGTACTTAACCAAGTTTACGCGTACTGGGGATAAATTCACAATTGAAGGAAAAGCTGAAAGCC
CAAATACGGTGGCTGAACTTCTACGTAATCTAGAAGCTTCTCCTTGGTATCGCAATGCCTTTATGAATTCCTTCCTTGCC
GTGGATGAAAACAAAAATAAAGACAAAACAGCAAGTTCTTTGGTGCCTCGTGTTGAGGAAAATTATGGAAGCTTTGTTGT
CACTGTAGATTTAGGTGAAATCGGGACAACTGCTGAGGCTGCACCAACGTCAGACGTTGCAGCATCAGGGGCAGTAGGGG
TGACAAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9T9R8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

77.465

98.611

0.764
  comN Acinetobacter baylyi ADP1

78.173

91.204

0.713

Multiple sequence alignment