Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACM660_RS18005 Genome accession   NZ_CP181170
Coordinates   3807760..3808287 (-) Length   175 a.a.
NCBI ID   WP_005201352.1    Uniprot ID   N9TA84
Organism   Acinetobacter sp. SEK541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3802760..3813287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS17985 (ACM660_17985) - 3803000..3803863 (-) 864 WP_005201345.1 hypothetical protein -
  ACM660_RS17990 (ACM660_17990) aroB 3803883..3804965 (-) 1083 WP_005201347.1 3-dehydroquinate synthase -
  ACM660_RS17995 (ACM660_17995) aroK 3804986..3805546 (-) 561 WP_005201348.1 shikimate kinase AroK -
  ACM660_RS18000 (ACM660_18000) pilQ 3805566..3807743 (-) 2178 WP_005201350.1 type IV pilus secretin PilQ family protein Machinery gene
  ACM660_RS18005 (ACM660_18005) pilP 3807760..3808287 (-) 528 WP_005201352.1 pilus assembly protein PilP Machinery gene
  ACM660_RS18010 (ACM660_18010) comO 3808290..3809033 (-) 744 WP_005201354.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACM660_RS18015 (ACM660_18015) pilN 3809030..3809680 (-) 651 WP_005201357.1 PilN domain-containing protein Machinery gene
  ACM660_RS18020 (ACM660_18020) comM 3809680..3810738 (-) 1059 WP_004803903.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19273.45 Da        Isoelectric Point: 9.6398

>NTDB_id=1099399 ACM660_RS18005 WP_005201352.1 3807760..3808287(-) (pilP) [Acinetobacter sp. SEK541]
MNNYKLLLGLFIGATLVGCDSRIDAVNQKMADIRNQPPLPIEPAPVFTPVPLFNYSAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALESLNMKGSMRGKTSNTIALIQTPDGQIERVQVGSYLGMNQGRIIKISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1099399 ACM660_RS18005 WP_005201352.1 3807760..3808287(-) (pilP) [Acinetobacter sp. SEK541]
GTGAATAATTATAAATTATTACTGGGTTTATTCATTGGGGCGACTTTGGTGGGGTGTGATTCGCGTATTGATGCGGTGAA
TCAGAAGATGGCAGACATTCGTAATCAGCCACCTTTGCCAATTGAGCCAGCACCAGTTTTTACCCCTGTGCCATTGTTTA
ACTATTCAGCTCATCAGCTTAAAAGCCCATTTATGCCAAGCTCATTGGCTGCTGAATTGAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTTAATCGCCAGCCACAGCCTTTAGAGAGTTATGCGCTGGAATCGTTGAATATGAAGGGCAGTATGCG
GGGTAAAACCAGCAATACCATTGCTCTGATTCAGACACCAGACGGTCAAATTGAACGTGTGCAAGTCGGAAGTTATTTGG
GGATGAATCAAGGGCGTATTATTAAAATTAGCCCAACCCAAATCGATTTGGTGGAGATTGTACCTGATGGTCGAGAAGGC
TATGTCGAGAGACCTCGTACACTCGTTTTAATTGGACCAGCGCCGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9TA84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

81.714

100

0.817
  comL Acinetobacter baylyi ADP1

73.714

100

0.737

Multiple sequence alignment