Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACM2W4_RS00195 Genome accession   NZ_CP181086
Coordinates   37965..39203 (+) Length   412 a.a.
NCBI ID   WP_416135860.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain B6     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32965..44203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM2W4_RS00175 (ACM2W4_00175) yfmF 33197..34465 (+) 1269 WP_086293487.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  ACM2W4_RS00180 (ACM2W4_00180) yfmH 34458..35756 (+) 1299 WP_416135859.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACM2W4_RS00185 (ACM2W4_00185) - 36221..37123 (+) 903 WP_159161176.1 helix-turn-helix domain-containing protein -
  ACM2W4_RS00190 (ACM2W4_00190) pgsA 37256..37837 (+) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACM2W4_RS00195 (ACM2W4_00195) cinA 37965..39203 (+) 1239 WP_416135860.1 competence/damage-inducible protein A Machinery gene
  ACM2W4_RS00200 (ACM2W4_00200) recA 39306..40349 (+) 1044 WP_005226448.1 recombinase RecA Machinery gene
  ACM2W4_RS00205 (ACM2W4_00205) rny 40593..42167 (+) 1575 WP_005232891.1 ribonuclease Y -
  ACM2W4_RS00210 (ACM2W4_00210) treR 42466..43182 (-) 717 WP_005226457.1 trehalose operon repressor -
  ACM2W4_RS00215 (ACM2W4_00215) pgmB 43237..43887 (-) 651 WP_416135861.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44928.04 Da        Isoelectric Point: 4.6123

>NTDB_id=1098072 ACM2W4_RS00195 WP_416135860.1 37965..39203(+) (cinA) [Enterococcus casseliflavus strain B6]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDGVSLPNPNGLAIGIFYQTVATSYLLLPGPPSELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADEAQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVERLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFPGGFVTYSAATKSKLLGIDP
ELLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSSQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1098072 ACM2W4_RS00195 WP_416135860.1 37965..39203(+) (cinA) [Enterococcus casseliflavus strain B6]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCGACCTTCTTGTCAGA
AGAACTGGCAAGTCTTGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAAGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTATTGTGCGGCGGCTTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGTCATGTGGGACAAGAGTTAGTCAGAGATGAACCAGGTTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCA
ACGGAGGATGACGGAAAACAATTTGCGGCAGACCCTCGTTTTTAAGGACGGTGTGTCTTTGCCAAATCCCAATGGACTAG
CGATCGGGATCTTTTATCAGACAGTCGCTACCAGTTATTTGCTGCTGCCAGGACCACCAAGTGAACTACAGGCGATGTTT
CTTACCCACGCAAAACCACTTCTGTTAGAGCAGTTTCCCCAAGAAGAGGTCTTGCTGTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCATTGGTCACAGAATTGGCCGATTTGATCGAGAATCAAGTCAATCCCACCATCGCTCCTTATGCCA
AACCTAATGAGGTCACGCTGCGTCTGACGGTCAAAACTGCAGACGAGGCGCAAGGGATCAAACAATTGGATGCGTTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGGTATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGAGCG
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACACTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGCAACAAAAAGCAAGCTCTTAGGCATCGATCCA
GAGCTTTTGGAAAGCTATGGAACTGTTAGTCAGGAATGTGCAGAAGCAATGGCCGTCTATGCCCGCAAACAAGCCGAGAC
TGATTATGCGGTGGCGTTTACTGGTGTTGCTGGTCCAGACGAGTTAGAAGGTCAGCCTAAAGGCACCGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCGAGCCAGCTGTATCACTTCAACCGCGACCGCGCCTATATTCGGCATAGTGCCGTCATG
GCGGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.591

100

0.519
  cinA Streptococcus mitis SK321

50.355

100

0.517
  cinA Streptococcus pneumoniae Rx1

50.355

100

0.517
  cinA Streptococcus pneumoniae R6

50.355

100

0.517
  cinA Streptococcus pneumoniae D39

50.355

100

0.517
  cinA Streptococcus mitis NCTC 12261

49.882

100

0.512
  cinA Streptococcus mutans UA159

50

100

0.505
  cinA Bacillus subtilis subsp. subtilis str. 168

45.232

99.272

0.449
  cinA Streptococcus suis isolate S10

42.995

100

0.432

Multiple sequence alignment