Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABXG87_RS00360 Genome accession   NZ_AP031488
Coordinates   61340..62608 (+) Length   422 a.a.
NCBI ID   WP_353551631.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56340..67608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS00330 (Ssa13956_00440) - 56666..57103 (-) 438 WP_045772361.1 LytTR family DNA-binding domain-containing protein -
  ABXG87_RS00335 - 57282..57587 (+) 306 WP_002886319.1 hypothetical protein -
  ABXG87_RS00340 (Ssa13956_00450) mutL 57637..59580 (+) 1944 WP_353551629.1 DNA mismatch repair endonuclease MutL -
  ABXG87_RS00345 (Ssa13956_00460) - 59711..59932 (+) 222 WP_002886321.1 hypothetical protein -
  ABXG87_RS00350 (Ssa13956_00470) ruvA 60090..60680 (+) 591 WP_002886323.1 Holliday junction branch migration protein RuvA -
  ABXG87_RS00355 (Ssa13956_00480) - 60689..61243 (+) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  ABXG87_RS00360 (Ssa13956_00490) cinA 61340..62608 (+) 1269 WP_353551631.1 competence/damage-inducible protein A Machinery gene
  ABXG87_RS00365 (Ssa13956_00500) recA 62644..63783 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  ABXG87_RS00370 (Ssa13956_00510) spx 63950..64348 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45673.82 Da        Isoelectric Point: 5.1868

>NTDB_id=109761 ABXG87_RS00360 WP_353551631.1 61340..62608(+) (cinA) [Streptococcus salivarius strain NBRC 13956]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNESRLLSVLDQASQRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGIITAQGVTYVVLPGPPSELKPM
VNQELISALTENHSSLYSRVLRFFGVGESQLVTVLKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSQEEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFEAFRLLKHHGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKAKM
LDIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGVALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQEDMI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=109761 ABXG87_RS00360 WP_353551631.1 61340..62608(+) (cinA) [Streptococcus salivarius strain NBRC 13956]
ATGAAAGCTGAATTGATTGCAGTAGGAACTGAAATCCTAACCGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTATTTTCACACAGCAGTAGGAGACAATGAAAGCCGCCTACTTTCAGTTCTTG
ATCAAGCCAGTCAGCGTAGTGATTTAGTCATACTTTGTGGTGGACTTGGCCCTACTGAGGACGACCTAACCAAGCAAACC
CTGGCTAAATTTTTAGGAAAAGAACTCGTTTTTGATGAGGAGGCTAGTAAAAAACTGGATAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCACAAATTGTTGAGGGGGCTATTCCCTTGCAAAACCCGACAGGTC
TTGCAGTTGGAGGGATTATTACTGCTCAAGGGGTGACCTATGTAGTCTTACCTGGTCCACCAAGTGAACTCAAACCTATG
GTGAATCAAGAACTTATTTCAGCTCTTACTGAGAATCACTCAAGTCTTTATTCGAGAGTCCTAAGATTCTTCGGCGTTGG
AGAAAGTCAATTAGTGACTGTTCTTAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACGAAGGCTTCTTCGCAAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCGACTAAAACTCTAGATGGCAAATCCTTATCTGATTTCATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAGCTTTTCGTTTGCTTAAGCACCATGGCAAGACCATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGGGCCTCACAAGTATTTAAAGGTGGATTTGTTACTTATAGCATTGAAGAAAAAGCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCTCG
AGCTAAAACAGATAGCGATTATGGAGTTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CGGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAAGACATGATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(264-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.94

99.289

0.744
  cinA Streptococcus mitis NCTC 12261

74.463

99.289

0.739
  cinA Streptococcus pneumoniae TIGR4

73.508

99.289

0.73
  cinA Streptococcus pneumoniae Rx1

73.27

99.289

0.727
  cinA Streptococcus pneumoniae R6

73.27

99.289

0.727
  cinA Streptococcus pneumoniae D39

73.031

99.289

0.725
  cinA Streptococcus mutans UA159

71.463

98.815

0.706
  cinA Streptococcus suis isolate S10

55.288

98.578

0.545
  cinA Bacillus subtilis subsp. subtilis str. 168

44.656

99.763

0.446

Multiple sequence alignment