Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMXYV_RS03775 Genome accession   NZ_CP180543
Coordinates   851503..852723 (-) Length   406 a.a.
NCBI ID   WP_415890440.1    Uniprot ID   -
Organism   Neptuniibacter sp. SY11_33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 846503..857723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYV_RS03750 (ACMXYV_03750) argJ 847568..848788 (+) 1221 WP_415890435.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYV_RS03755 (ACMXYV_03755) - 848788..849747 (+) 960 WP_415890436.1 Nudix family hydrolase -
  ACMXYV_RS03760 (ACMXYV_03760) yacG 849725..849952 (-) 228 WP_415890437.1 DNA gyrase inhibitor YacG -
  ACMXYV_RS03765 (ACMXYV_03765) coaE 849952..850554 (-) 603 WP_415890438.1 dephospho-CoA kinase -
  ACMXYV_RS03770 (ACMXYV_03770) - 850558..851490 (-) 933 WP_415890439.1 prepilin peptidase -
  ACMXYV_RS03775 (ACMXYV_03775) pilC 851503..852723 (-) 1221 WP_415890440.1 type II secretion system F family protein Machinery gene
  ACMXYV_RS03780 (ACMXYV_03780) pilB 852740..854455 (-) 1716 WP_415890441.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYV_RS03785 (ACMXYV_03785) - 854704..855210 (+) 507 WP_415890442.1 pilin -
  ACMXYV_RS03790 (ACMXYV_03790) - 855401..855742 (+) 342 WP_415890443.1 hypothetical protein -
  ACMXYV_RS03795 (ACMXYV_03795) nadC 855829..856674 (-) 846 WP_415890444.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMXYV_RS03800 (ACMXYV_03800) ampD 856776..857321 (+) 546 WP_415890445.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43973.36 Da        Isoelectric Point: 9.7448

>NTDB_id=1096326 ACMXYV_RS03775 WP_415890440.1 851503..852723(-) (pilC) [Neptuniibacter sp. SY11_33]
MAKEAKLYTFTWQGKDKSGNKSKGKIDATTAAIAKAQLRKQGILTSRIAKERSAGMFSAKNKPVKPVDIAFFTRQMATMM
RSGVPLLQGLEITAGGIEKQKLKDIVYDIKNDVNSGTDFSTSLTRHPQHFDDLYCNLVNAGEQSGALDAMLDRIATYKEK
LESLKAKIKKALTYPTAVIVVGIVVSAILLVKVVPQFEDVFKSFGAELPAFTQFVISLSETAQELWWVVLIAVAIFGFAF
QKARQKSAKFRDGVDKAILKIPVIGQILHNASIARFARTLSTTFAAGVPLVNALDSAAGASGNALYRDAILQIKNGVSTG
QSLQNAVTMTGIFPNMTVQMIAIGEEAGSLEMMLEKIADFYEEQVDNAVDNLSSLLEPLIMVVLGVLVGGLVVAMYLPIF
QLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1096326 ACMXYV_RS03775 WP_415890440.1 851503..852723(-) (pilC) [Neptuniibacter sp. SY11_33]
ATGGCTAAAGAAGCCAAACTTTATACTTTTACCTGGCAGGGAAAAGATAAAAGCGGAAACAAAAGCAAAGGCAAAATTGA
TGCTACCACAGCAGCAATAGCCAAAGCTCAACTACGTAAACAAGGCATATTAACCTCCCGCATTGCCAAAGAACGCTCTG
CAGGGATGTTTAGTGCTAAAAACAAACCCGTCAAACCCGTTGATATAGCTTTTTTCACCCGTCAAATGGCCACCATGATG
CGTTCCGGCGTGCCTTTACTTCAGGGCTTAGAAATCACGGCAGGCGGAATAGAAAAACAAAAACTTAAAGATATTGTTTA
CGACATTAAGAATGACGTTAATAGCGGCACCGATTTCTCTACTTCCTTGACCCGCCACCCTCAGCATTTTGATGACCTGT
ACTGTAACTTAGTCAATGCAGGGGAACAGTCTGGCGCACTTGATGCAATGCTAGACCGTATAGCAACCTATAAAGAAAAA
TTAGAGTCACTTAAAGCTAAAATCAAAAAAGCACTTACATATCCAACAGCCGTTATCGTTGTCGGTATTGTTGTATCAGC
AATCCTTCTTGTAAAAGTAGTACCACAATTTGAAGATGTATTTAAAAGCTTTGGTGCTGAACTTCCCGCTTTCACCCAGT
TTGTGATTAGTCTGTCTGAAACTGCTCAAGAATTGTGGTGGGTAGTCTTGATAGCTGTTGCCATATTTGGTTTTGCTTTC
CAAAAAGCTAGGCAAAAATCAGCTAAGTTTAGAGATGGCGTTGATAAAGCTATACTTAAAATACCGGTTATTGGTCAGAT
TCTTCACAATGCCTCTATAGCTAGATTTGCAAGGACACTTTCAACCACTTTCGCAGCCGGTGTCCCCTTGGTTAACGCAC
TTGACTCCGCGGCAGGCGCATCAGGCAATGCTCTTTATCGAGATGCAATATTGCAAATCAAAAATGGGGTTTCGACAGGC
CAATCATTACAAAACGCTGTAACTATGACCGGCATATTCCCCAATATGACTGTTCAGATGATTGCTATTGGTGAAGAAGC
AGGTTCACTTGAAATGATGCTAGAAAAGATCGCTGACTTCTACGAAGAACAAGTCGATAATGCTGTAGATAACCTATCCA
GCCTACTAGAGCCTTTAATTATGGTCGTATTAGGTGTATTAGTGGGTGGACTTGTAGTAGCCATGTACCTACCAATCTTC
CAGCTTGGTCAAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.74

100

0.579
  pilC Legionella pneumophila strain ERS1305867

55.75

98.522

0.549
  pilC Acinetobacter baumannii D1279779

54.523

98.03

0.534
  pilC Acinetobacter baylyi ADP1

53.015

98.03

0.52
  pilC Vibrio cholerae strain A1552

43.284

99.015

0.429
  pilG Neisseria meningitidis 44/76-A

42.462

98.03

0.416
  pilG Neisseria gonorrhoeae MS11

42.462

98.03

0.416
  pilC Vibrio campbellii strain DS40M4

41.439

99.261

0.411

Multiple sequence alignment