Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMYQ1_RS02215 Genome accession   NZ_CP180478
Coordinates   521284..522555 (-) Length   423 a.a.
NCBI ID   WP_393944172.1    Uniprot ID   -
Organism   Shewanella oncorhynchi strain XWfb1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516284..527555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMYQ1_RS02180 (ACMYQ1_02180) - 516309..517235 (+) 927 WP_113940795.1 exopolyphosphatase -
  ACMYQ1_RS02185 (ACMYQ1_02185) - 517302..517838 (-) 537 WP_106649212.1 thioredoxin family protein -
  ACMYQ1_RS02190 (ACMYQ1_02190) mutT 518069..518461 (-) 393 WP_131523409.1 8-oxo-dGTP diphosphatase MutT -
  ACMYQ1_RS02195 (ACMYQ1_02195) yacG 518540..518749 (-) 210 WP_006083355.1 DNA gyrase inhibitor YacG -
  ACMYQ1_RS02200 (ACMYQ1_02200) zapD 518823..519557 (-) 735 WP_415775737.1 cell division protein ZapD -
  ACMYQ1_RS02205 (ACMYQ1_02205) coaE 519550..520167 (-) 618 WP_393944176.1 dephospho-CoA kinase -
  ACMYQ1_RS02210 (ACMYQ1_02210) pilD 520316..521242 (-) 927 WP_393944174.1 prepilin peptidase Machinery gene
  ACMYQ1_RS02215 (ACMYQ1_02215) pilC 521284..522555 (-) 1272 WP_393944172.1 type II secretion system F family protein Machinery gene
  ACMYQ1_RS02220 (ACMYQ1_02220) pilB 522659..524368 (-) 1710 WP_415775738.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMYQ1_RS02225 (ACMYQ1_02225) - 524798..526156 (+) 1359 WP_415775739.1 O-antigen ligase family protein -
  ACMYQ1_RS02230 (ACMYQ1_02230) - 526214..526597 (-) 384 WP_415775740.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46126.27 Da        Isoelectric Point: 10.1188

>NTDB_id=1096004 ACMYQ1_RS02215 WP_393944172.1 521284..522555(-) (pilC) [Shewanella oncorhynchi strain XWfb1]
MATATTVRKSRGKKNEQKSQPKIYTFEWKGVNRDGKKTAGELRGATAAEIRSQLKSQGVNPKSVRKQSSPLFKLGEANIT
PMDIAMMTRQVATMLAAGVPLVTTFELLGRGHEKAKMRELLGTILTEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVAILVTVLLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIVGGVFLFVRAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGNIVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1096004 ACMYQ1_RS02215 WP_393944172.1 521284..522555(-) (pilC) [Shewanella oncorhynchi strain XWfb1]
ATGGCTACGGCAACAACAGTAAGAAAGTCTCGCGGCAAAAAAAACGAGCAAAAAAGCCAGCCCAAAATCTATACCTTTGA
ATGGAAAGGCGTTAACCGCGACGGCAAAAAAACGGCAGGAGAGCTTAGAGGTGCTACCGCAGCCGAAATCCGTAGCCAGC
TTAAATCACAAGGAGTAAACCCTAAGAGCGTTCGTAAGCAGTCCTCTCCGCTATTTAAGTTGGGTGAAGCCAATATCACC
CCTATGGATATAGCAATGATGACCCGTCAAGTCGCGACTATGTTGGCGGCAGGCGTTCCTTTGGTAACGACATTTGAACT
ACTCGGCCGTGGCCATGAAAAAGCTAAAATGCGGGAATTACTGGGTACTATTTTAACCGAAATTCAATCGGGTATTCCCT
TATCCGATGCTATGCGCCCCCATAGACGTTACTTCGACGAACTATATGTTGACTTAGTCGCCGCGGGTGAGCATTCAGGT
TCACTCGATTTGGTTTTCGATCGAGTCGCAACCTACAGAGAAAAAACGGAAGCGCTCAAATCAAAAATTAAGAAGGCCAT
GTTTTATCCTGCTGCAGTTGTAATTGTCGCTATTTTAGTTACGGTTTTGTTACTTCTTTTTGTGGTGCCACAGTTTGAAG
ATATTTTTAAAGGCTTTGGTGCAGAACTGCCCGCTTTTACGCAACTGGTACTGCATATTTCCCGCGGCTTACAATCCTCT
TGGTATATCTTTTTAGCCGCTATTGTCGGCGGCGTATTTTTGTTTGTACGCGCGCACCGAAACTCGCAAATGGTGCGAGA
TAGAGTCGATGAAGCCGTGCTTAAAATCCCAGCCATTGGACCGATTTTACACAAAGGTGCCATGGCTCGTTTCGCCCGCA
CCTTAGCTACCACCTTTGCCGCAGGTGTGCCGTTAATTGATGGCTTAGAGTCCGCCGCTGGCGCATCGGGTAATGCGGTC
TATCGCAAAGCCATTTTAAAAATTCGCCAAGAGGTCATGGCGGGGATGCAGATGAATGTCGCGATGCAAACCACTGGTCT
CTTCCCCGATATGTTAGTGCAGATGGTGATGATAGGCGAAGAATCCGGCTCGCTAGATAACATGCTCAATAAAGTCTCAA
CCATCTATGAAATGCAGGTCGACGATGCAGTTGATGGCTTATCAAGTCTGATAGAACCGATTATGATGGTGGTTATCGGT
ACTGTTGTGGGTGGTTTGATTGTTGCCATGTATTTACCTATCTTCCAGATGGGTAATATTGTTGGCGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.303

93.617

0.518
  pilC Legionella pneumophila strain ERS1305867

49.505

95.508

0.473
  pilC Acinetobacter baumannii D1279779

49.246

94.09

0.463
  pilC Acinetobacter baylyi ADP1

49.118

93.853

0.461
  pilC Vibrio cholerae strain A1552

46.867

94.326

0.442
  pilC Vibrio campbellii strain DS40M4

44.226

96.217

0.426
  pilG Neisseria gonorrhoeae MS11

42.04

95.035

0.4
  pilG Neisseria meningitidis 44/76-A

41.935

95.272

0.4

Multiple sequence alignment