Detailed information NTG1096003

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMYQ1_RS02210
• Genome accession: NZ_CP180478
• Coordinates: 520316..521242 (-)
• Length: 308 a.a.
• NCBI ID: WP_393944174.1
• Uniprot ID: -
• Organism: Shewanella oncorhynchi strain XWfb1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 515316..526242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMYQ1_RS02180 (ACMYQ1_02180)	-	516309..517235 (+)	927	WP_113940795.1	exopolyphosphatase	-
ACMYQ1_RS02185 (ACMYQ1_02185)	-	517302..517838 (-)	537	WP_106649212.1	thioredoxin family protein	-
ACMYQ1_RS02190 (ACMYQ1_02190)	mutT	518069..518461 (-)	393	WP_131523409.1	8-oxo-dGTP diphosphatase MutT	-
ACMYQ1_RS02195 (ACMYQ1_02195)	yacG	518540..518749 (-)	210	WP_006083355.1	DNA gyrase inhibitor YacG	-
ACMYQ1_RS02200 (ACMYQ1_02200)	zapD	518823..519557 (-)	735	WP_415775737.1	cell division protein ZapD	-
ACMYQ1_RS02205 (ACMYQ1_02205)	coaE	519550..520167 (-)	618	WP_393944176.1	dephospho-CoA kinase	-
ACMYQ1_RS02210 (ACMYQ1_02210)	pilD	520316..521242 (-)	927	WP_393944174.1	prepilin peptidase	Machinery gene
ACMYQ1_RS02215 (ACMYQ1_02215)	pilC	521284..522555 (-)	1272	WP_393944172.1	type II secretion system F family protein	Machinery gene
ACMYQ1_RS02220 (ACMYQ1_02220)	pilB	522659..524368 (-)	1710	WP_415775738.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACMYQ1_RS02225 (ACMYQ1_02225)	-	524798..526156 (+)	1359	WP_415775739.1	O-antigen ligase family protein	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34340.77 Da
• Isoelectric Point: 6.8235

>NTDB_id=1096003 ACMYQ1_RS02210 WP_393944174.1 520316..521242(-) (pilD) [Shewanella oncorhynchi strain XWfb1]
MTEFISLLGHSFDQSPWLFITLSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHEDIVKIIGIDNLNTPIDSF
PEKYNLVVPGSACPKCKTAIKPWHNLPVFGWLMLKGKCAACHAPISARYPIIELITGLLVATLAWHFGPSWQFVFASILT
FVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGAVVGIAMIVSKRLKQGNPIPFGPYIAAAGWIALIWGQPIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=1096003 ACMYQ1_RS02210 WP_393944174.1 520316..521242(-) (pilD) [Shewanella oncorhynchi strain XWfb1]
ATGACTGAATTTATCTCTCTTTTGGGCCACTCTTTTGATCAGAGTCCTTGGCTCTTTATTACACTAAGCTTTATTTTTGC
CGCCACCATAGGCAGTTTTTTAAATGTGGTGATTCACAGATTTCCTGTGATGATGAAACGGGAATGGCAGCAAGAATGTA
ATCAGTATTTACAGGAATACCACGAAGACATAGTCAAAATAATAGGCATAGATAATCTCAATACACCGATAGATAGCTTC
CCCGAAAAATATAATCTTGTGGTGCCGGGCTCTGCTTGCCCTAAGTGCAAAACGGCGATTAAACCTTGGCATAATTTACC
AGTATTCGGCTGGTTAATGCTCAAGGGAAAATGCGCAGCCTGTCACGCCCCCATTTCCGCCCGCTACCCAATAATTGAAT
TAATCACGGGGCTACTTGTTGCGACTTTAGCGTGGCACTTTGGTCCAAGCTGGCAATTTGTCTTTGCGAGCATACTGACA
TTTGTACTTGTCGCACTTACTGGTATCGATCTTGATGAGATGCTGCTCCCCGACCAAATGACGTTACCGTTACTTTGGCT
CGGCTTGATCATCAATCTAAATCATACCTTTGCGAGCCCAACTGATGCCATTATCGGTGCGGCAGCAGGCTATTTAAGCT
TATGGTCCATTTTTTGGCTATTTAAGATCCTCACTGGCAAGGAAGGCATGGGCTATGGGGACTTTAAACTGCTCGCCGTT
TTCGGTGCTTGGCTCGGCTGGCAAATGCTGCCGCTGGTGATTTTACTTTCGTCCCTCGTTGGCGCAGTGGTTGGCATCGC
CATGATTGTCAGTAAACGCCTCAAGCAAGGTAATCCCATCCCATTTGGGCCTTATATTGCTGCCGCAGGCTGGATAGCCC
TAATATGGGGTCAACCTATAGTGGATTGGTACTTAAGTACGTTATAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (158-266)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.203	95.779	0.5
pilD	Vibrio campbellii strain DS40M4	50.336	96.753	0.487
pilD	Acinetobacter nosocomialis M2	49.653	93.506	0.464
pilD	Acinetobacter baumannii D1279779	49.481	93.831	0.464
pilD	Neisseria gonorrhoeae MS11	44.33	94.481	0.419