Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMYNJ_RS15330 Genome accession   NZ_CP180391
Coordinates   3605551..3606813 (+) Length   420 a.a.
NCBI ID   WP_416203269.1    Uniprot ID   -
Organism   Xanthomonas euvesicatoria pv. polysciadis strain Pgu1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3600551..3611813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMYNJ_RS15310 - 3601440..3602237 (-) 798 WP_416203265.1 glycosyltransferase family A protein -
  ACMYNJ_RS15315 - 3602241..3602564 (-) 324 WP_416203266.1 SMR family transporter -
  ACMYNJ_RS15320 - 3602944..3603357 (+) 414 WP_416203267.1 pilin -
  ACMYNJ_RS15325 - 3603439..3605421 (+) 1983 WP_416203268.1 hypothetical protein -
  ACMYNJ_RS15330 pilC 3605551..3606813 (+) 1263 WP_416203269.1 type II secretion system F family protein Machinery gene
  ACMYNJ_RS15335 - 3606820..3607683 (+) 864 WP_008576868.1 prepilin peptidase -
  ACMYNJ_RS15340 coaE 3607697..3608302 (+) 606 WP_416203270.1 dephospho-CoA kinase -
  ACMYNJ_RS15345 - 3608372..3609706 (-) 1335 WP_008576864.1 sensor histidine kinase -
  ACMYNJ_RS15350 - 3609699..3610376 (-) 678 WP_003490678.1 response regulator transcription factor -
  ACMYNJ_RS15355 - 3610402..3610845 (-) 444 WP_416203271.1 hypothetical protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45808.36 Da        Isoelectric Point: 10.3148

>NTDB_id=1095642 ACMYNJ_RS15330 WP_416203269.1 3605551..3606813(+) (pilC) [Xanthomonas euvesicatoria pv. polysciadis strain Pgu1]
MAAITTAKKTPNTNRSSTPAMTLFVWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGAAGKPIKPR
DIAFFSRQIATMMKSGVPIVGSLEIIGEGSKNPRMKKMVGEIRTDIEGGLSLNEAITKHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIESLKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWL
PMLIVTVGIVVGLIMAYKRSPAMQHGLDRLVLKLPVIGKIMHNSSVARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTI
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1095642 ACMYNJ_RS15330 WP_416203269.1 3605551..3606813(+) (pilC) [Xanthomonas euvesicatoria pv. polysciadis strain Pgu1]
TTGGCTGCGATCACGACGGCGAAAAAGACGCCCAATACCAACCGTAGTAGTACACCAGCGATGACGCTCTTTGTCTGGGA
GGGGACAGACAAGCGCGGCGTCAAGATGAAGGGCGATGAGCTTGCTCGCAACGCCAATATGTTGCGGGCCGAGTTGCGTC
GGCGTGGCATCAATCCGACGGTCGTCAAGACCAAGCCCAAGCCGTTGTTTGGCGCGGCAGGCAAGCCGATCAAGCCCAGG
GACATTGCGTTCTTCAGCCGTCAGATCGCCACCATGATGAAGTCCGGCGTGCCGATCGTCGGCTCTCTGGAGATCATCGG
CGAGGGATCGAAGAATCCCCGCATGAAGAAGATGGTCGGCGAGATCCGTACCGACATCGAAGGCGGCTTGTCGCTCAACG
AGGCCATCACCAAGCACCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCCGGGCCGGCGAAAGCGCAGGTGTGCTC
GACACCGTGCTCGACACGGTCGCCACCTACAAGGAAAACATCGAATCCTTGAAGGGCAAGATCAAGAAGGCCTTGTTCTA
CCCCGCCATGGTGATGGCGGTGGCATTGATCGTCAGCTCGATCCTGTTGATCTGGGTGGTGCCGCAGTTCGAAACGGTGT
TCTCCAGTTTCGGCGCCGAGCTGCCGGCGTTCACCCAGATGATCGTGAACCTCTCGCGCTTCATGGTCTCGTGGTGGCTG
CCAATGTTGATCGTGACCGTCGGCATCGTCGTCGGCCTGATCATGGCTTATAAACGCTCTCCAGCGATGCAACATGGGCT
GGATCGGCTGGTGCTGAAGTTACCGGTGATCGGCAAGATCATGCACAACAGCTCCGTGGCGCGCTTTGCGCGCACCACCG
CGGTGACCTTCAAGGCCGGTGTGCCGCTGGTGGAAGCGCTCGGCATCGTCGCGGGCGCCACCGGCAACAAGGTGTACGAA
GAGGCGGTCCTGCGCATGCGTGACGACGTCTCGGTCGGCTATCCGGTCAATCTGTCGATGAAGCAGGTAAACCTGTTCCC
GCACATGGTGATCCAGATGACCGCCATCGGCGAAGAAGCCGGCGCGCTCGATGCCATGCTGTTCAAGGTTGCCGAGTACT
TCGAGCAGGAAGTCAACAACGCGGTCGACGCACTGAGCAGCCTGCTCGAACCCATGATCATGGTCTTCATCGGCACCATC
GTCGGTGGCATGGTCATCGGTATGTACTTGCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.266

94.762

0.505
  pilC Legionella pneumophila strain ERS1305867

51.724

96.667

0.5
  pilC Acinetobacter baylyi ADP1

49.876

95.952

0.479
  pilC Acinetobacter baumannii D1279779

49

95.238

0.467
  pilG Neisseria gonorrhoeae MS11

42.04

95.714

0.402
  pilG Neisseria meningitidis 44/76-A

41.687

95.952

0.4
  pilC Vibrio cholerae strain A1552

40.302

94.524

0.381
  pilC Vibrio campbellii strain DS40M4

38.725

97.143

0.376
  pilC Thermus thermophilus HB27

38.404

95.476

0.367

Multiple sequence alignment