Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACLBKY_RS08440 Genome accession   NZ_CP180233
Coordinates   1661091..1662341 (+) Length   416 a.a.
NCBI ID   WP_414835289.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba 5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1656091..1667341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS08415 (ACLBKY_08415) ymfI 1657502..1658230 (+) 729 WP_394156709.1 elongation factor P 5-aminopentanone reductase -
  ACLBKY_RS08420 (ACLBKY_08420) - 1658304..1658561 (+) 258 WP_008344693.1 DUF3243 domain-containing protein -
  ACLBKY_RS08425 (ACLBKY_08425) - 1658693..1659484 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  ACLBKY_RS08430 (ACLBKY_08430) - 1659508..1660419 (+) 912 WP_019744182.1 helix-turn-helix domain-containing protein -
  ACLBKY_RS08435 (ACLBKY_08435) pgsA 1660493..1661074 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLBKY_RS08440 (ACLBKY_08440) cinA 1661091..1662341 (+) 1251 WP_414835289.1 competence/damage-inducible protein A Machinery gene
  ACLBKY_RS08445 (ACLBKY_08445) recA 1662519..1663562 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  ACLBKY_RS08450 (ACLBKY_08450) rny 1663863..1665425 (+) 1563 WP_003211958.1 ribonuclease Y -
  ACLBKY_RS08455 (ACLBKY_08455) - 1665515..1666309 (+) 795 WP_008344680.1 TIGR00282 family metallophosphoesterase -
  ACLBKY_RS08460 (ACLBKY_08460) spoVS 1666512..1666772 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45557.63 Da        Isoelectric Point: 4.8084

>NTDB_id=1094738 ACLBKY_RS08440 WP_414835289.1 1661091..1662341(+) (cinA) [Bacillus altitudinis strain Ba 5]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLEADLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGDTSLAFEASKALHEHGKTVAGAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRTLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1094738 ACLBKY_RS08440 WP_414835289.1 1661091..1662341(+) (cinA) [Bacillus altitudinis strain Ba 5]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCTCAGGAAAGATCGAATTTTATTATCTTCTCAGGGGGTCTTGGACCAACGAAAGACGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGTGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTTGGCCTAAAGGAAAAAATCGTGTCTGTAGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAGCAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTGATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGGGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGTAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTTAGTAAAGAGTGTGCGTTAGAGCTCGCAGAAGGCGTTAGAACACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGCCAGCCGGTTGGAAAAGTAT
TTATCGGTCTATCGACAAAAGATCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

47.129

100

0.474
  cinA Streptococcus pneumoniae Rx1

46.89

100

0.471
  cinA Streptococcus pneumoniae R6

46.89

100

0.471
  cinA Streptococcus pneumoniae D39

46.651

100

0.469
  cinA Streptococcus mutans UA159

47.666

97.837

0.466
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment