Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACLBKW_RS16485 Genome accession   NZ_CP180232
Coordinates   3194640..3195107 (-) Length   155 a.a.
NCBI ID   WP_039169829.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3189640..3200107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKW_RS16450 (ACLBKW_16450) fliW 3189776..3190210 (-) 435 WP_007499985.1 flagellar assembly protein FliW -
  ACLBKW_RS16455 (ACLBKW_16455) - 3190239..3190817 (-) 579 WP_035701576.1 DUF6470 family protein -
  ACLBKW_RS16460 (ACLBKW_16460) flgL 3190864..3191775 (-) 912 WP_017368141.1 flagellar hook-associated protein FlgL -
  ACLBKW_RS16465 (ACLBKW_16465) flgK 3191784..3193304 (-) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  ACLBKW_RS16470 (ACLBKW_16470) - 3193320..3193802 (-) 483 WP_008348261.1 flagellar protein FlgN -
  ACLBKW_RS16475 (ACLBKW_16475) flgM 3193821..3194084 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACLBKW_RS16480 (ACLBKW_16480) - 3194164..3194583 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  ACLBKW_RS16485 (ACLBKW_16485) comFC 3194640..3195107 (-) 468 WP_039169829.1 ComF family protein Machinery gene
  ACLBKW_RS16490 (ACLBKW_16490) - 3195159..3195362 (-) 204 Protein_3191 hypothetical protein -
  ACLBKW_RS16495 (ACLBKW_16495) - 3195323..3195616 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  ACLBKW_RS16500 (ACLBKW_16500) comFA 3195681..3197060 (-) 1380 WP_414834791.1 DEAD/DEAH box helicase Machinery gene
  ACLBKW_RS16505 (ACLBKW_16505) - 3197180..3198022 (-) 843 WP_414834474.1 DegV family protein -
  ACLBKW_RS16510 (ACLBKW_16510) degU 3198234..3198923 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17686.73 Da        Isoelectric Point: 10.7974

>NTDB_id=1094700 ACLBKW_RS16485 WP_039169829.1 3194640..3195107(-) (comFC) [Bacillus altitudinis strain Ba]
MNRSVYAYNDFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPIL
EPLIKVHQSKQSKKRKNERLHQQNLFQLRQSNPIVLKDVILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 468 bp        

>NTDB_id=1094700 ACLBKW_RS16485 WP_039169829.1 3194640..3195107(-) (comFC) [Bacillus altitudinis strain Ba]
ATGAATCGGTCTGTTTATGCTTACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTT
AGCTGATCTATTTAAAAAAGATGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTGCTTGTCCCAATTC
CTTTGAGTAAAGAGAGATTAAAGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTG
GAACCACTTATAAAAGTACATCAAAGTAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCA
ATTAAGGCAGTCAAACCCGATCGTTCTAAAGGATGTCATATTAATCGATGATATTTATACAACTGGAGCGACAGTCTATC
ATGCAGCAAAAATTTTAAAAGACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(88-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

54.194

100

0.542
  comFC/cflB Streptococcus mitis NCTC 12261

40.523

98.71

0.4
  comFC/cflB Streptococcus mitis SK321

40.523

98.71

0.4
  comFC/cflB Streptococcus pneumoniae Rx1

39.869

98.71

0.394
  comFC/cflB Streptococcus pneumoniae D39

39.869

98.71

0.394
  comFC/cflB Streptococcus pneumoniae R6

39.869

98.71

0.394
  comFC/cflB Streptococcus pneumoniae TIGR4

39.869

98.71

0.394
  comFC Lactococcus lactis subsp. cremoris KW2

41.958

92.258

0.387

Multiple sequence alignment