Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACLBKW_RS16510 Genome accession   NZ_CP180232
Coordinates   3198234..3198923 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain Ba     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3193234..3203923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKW_RS16470 (ACLBKW_16470) - 3193320..3193802 (-) 483 WP_008348261.1 flagellar protein FlgN -
  ACLBKW_RS16475 (ACLBKW_16475) flgM 3193821..3194084 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACLBKW_RS16480 (ACLBKW_16480) - 3194164..3194583 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  ACLBKW_RS16485 (ACLBKW_16485) comFC 3194640..3195107 (-) 468 WP_039169829.1 ComF family protein Machinery gene
  ACLBKW_RS16490 (ACLBKW_16490) - 3195159..3195362 (-) 204 Protein_3191 hypothetical protein -
  ACLBKW_RS16495 (ACLBKW_16495) - 3195323..3195616 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  ACLBKW_RS16500 (ACLBKW_16500) comFA 3195681..3197060 (-) 1380 WP_414834791.1 DEAD/DEAH box helicase Machinery gene
  ACLBKW_RS16505 (ACLBKW_16505) - 3197180..3198022 (-) 843 WP_414834474.1 DegV family protein -
  ACLBKW_RS16510 (ACLBKW_16510) degU 3198234..3198923 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACLBKW_RS16515 (ACLBKW_16515) degS 3198988..3200163 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ACLBKW_RS16520 (ACLBKW_16520) - 3200385..3201053 (+) 669 WP_017357860.1 YigZ family protein -
  ACLBKW_RS16525 (ACLBKW_16525) - 3201038..3202135 (+) 1098 Protein_3198 LCP family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1094702 ACLBKW_RS16510 WP_008348273.1 3198234..3198923(-) (degU) [Bacillus altitudinis strain Ba]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1094702 ACLBKW_RS16510 WP_008348273.1 3198234..3198923(-) (degU) [Bacillus altitudinis strain Ba]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCAGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment