Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLBLI_RS14120 Genome accession   NZ_CP180210
Coordinates   3221898..3223109 (+) Length   403 a.a.
NCBI ID   WP_414828230.1    Uniprot ID   -
Organism   Alteromonas sp. H39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3216898..3228109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBLI_RS14090 (ACLBLI_14090) - 3217122..3217868 (-) 747 WP_414828224.1 GntR family transcriptional regulator -
  ACLBLI_RS14095 (ACLBLI_14095) ampE 3218180..3219052 (-) 873 WP_414828225.1 beta-lactamase regulator AmpE -
  ACLBLI_RS14100 (ACLBLI_14100) ampD 3219049..3219612 (-) 564 WP_414828226.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACLBLI_RS14105 (ACLBLI_14105) - 3219740..3220249 (+) 510 WP_414828227.1 TIGR02281 family clan AA aspartic protease -
  ACLBLI_RS14110 (ACLBLI_14110) nadC 3220268..3221125 (+) 858 WP_414828228.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACLBLI_RS14115 (ACLBLI_14115) - 3221366..3221806 (+) 441 WP_414828229.1 pilin -
  ACLBLI_RS14120 (ACLBLI_14120) pilC 3221898..3223109 (+) 1212 WP_414828230.1 type II secretion system F family protein Machinery gene
  ACLBLI_RS14125 (ACLBLI_14125) pilD 3223241..3224125 (+) 885 WP_414828231.1 prepilin peptidase Machinery gene
  ACLBLI_RS14130 (ACLBLI_14130) coaE 3224125..3224733 (+) 609 WP_414828232.1 dephospho-CoA kinase -
  ACLBLI_RS14135 (ACLBLI_14135) zapD 3225089..3225841 (+) 753 WP_414828233.1 cell division protein ZapD -
  ACLBLI_RS14140 (ACLBLI_14140) yacG 3226226..3226453 (+) 228 WP_414828234.1 DNA gyrase inhibitor YacG -
  ACLBLI_RS14145 (ACLBLI_14145) - 3226463..3227326 (+) 864 WP_414828235.1 aspartoacylase -
  ACLBLI_RS14150 (ACLBLI_14150) mutT 3227536..3227931 (-) 396 WP_414828236.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43542.16 Da        Isoelectric Point: 9.7371

>NTDB_id=1094564 ACLBLI_RS14120 WP_414828230.1 3221898..3223109(+) (pilC) [Alteromonas sp. H39]
MAANDLITFEWQGADKSGAARKGEIRAKNPVAAKNMLRGQGISAKRVRKKTTSILKRKAKIKPADISIMSRQLATMLSAG
VSLIQSLDMIAQGHANPTMRKLLDEISNEVKAGTPLSTALRKHPDYFDDLYCDLVATGEQSGSLETIYDRIATYKEKAEA
LKSKIKKAMFYPIAVVVVAFIVTTILLVFVVPQFEEIFSSFGAELPAFTQLVLAISKFVQNYGVFIAIAAVGAGAMFMRA
HKKSQKLRDSVDKKVLRIPVIGEILKKASIARFTRTLSTTFAAGVPLMGALESAAGASGNAVYRDAILFIRDEVSGGTQM
NDAMRATAVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIIAMYLPIFQMG
NVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=1094564 ACLBLI_RS14120 WP_414828230.1 3221898..3223109(+) (pilC) [Alteromonas sp. H39]
ATGGCCGCCAATGATCTGATTACCTTTGAATGGCAGGGTGCGGATAAATCCGGAGCAGCTCGCAAAGGCGAGATAAGAGC
GAAGAACCCCGTTGCTGCCAAAAACATGCTGCGTGGACAAGGCATATCCGCCAAGCGCGTAAGAAAGAAAACGACTTCCA
TTCTTAAGCGTAAGGCAAAGATCAAGCCCGCTGACATTTCCATAATGTCCAGACAGCTCGCCACGATGTTGAGTGCCGGC
GTGTCATTAATACAGTCGCTGGACATGATTGCTCAGGGCCATGCCAACCCCACTATGCGTAAACTGCTGGATGAGATTTC
CAACGAGGTGAAAGCGGGTACGCCATTATCTACCGCGCTTCGCAAACATCCTGACTATTTTGATGACCTGTATTGCGATC
TGGTGGCTACCGGTGAGCAGTCGGGTTCCCTTGAAACCATTTACGACCGCATTGCAACCTACAAAGAAAAAGCTGAAGCG
CTGAAGTCAAAAATTAAAAAAGCGATGTTCTACCCCATCGCCGTTGTCGTTGTGGCGTTTATCGTCACCACCATTTTGCT
GGTTTTCGTGGTGCCTCAGTTTGAAGAGATTTTCAGTAGCTTTGGCGCAGAGTTACCGGCTTTCACTCAATTAGTTTTGG
CAATCTCGAAATTTGTACAGAATTACGGGGTATTCATCGCCATAGCAGCTGTGGGTGCAGGCGCAATGTTTATGCGCGCC
CACAAGAAATCACAAAAGCTGCGCGACAGCGTGGATAAAAAAGTACTGCGAATTCCCGTCATCGGTGAAATACTGAAAAA
GGCAAGTATTGCGCGTTTTACCCGCACCCTTTCTACTACCTTCGCCGCCGGAGTGCCGTTAATGGGCGCCTTGGAATCGG
CCGCAGGCGCCTCGGGTAATGCGGTTTACCGCGACGCCATTTTGTTCATTCGTGATGAAGTCTCTGGCGGTACGCAAATG
AATGACGCCATGCGTGCCACTGCGGTATTTCCGGATATGGTTACACAAATGATAGCCATCGGTGAGGAATCTGGCGCGGT
TGATGAGATGCTTTCTAAAATCGCGACCATTTACGAAGCCGAAGTGGATGATATGGTTGATGGGTTAACCAGCTTGCTGG
AGCCCATGATTATGGCCGTACTGGGTGTGGTAATTGGTGGCCTGATTATCGCCATGTATCTGCCAATCTTCCAGATGGGT
AATGTAGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.253

98.015

0.591
  pilC Acinetobacter baylyi ADP1

55.779

98.759

0.551
  pilC Acinetobacter baumannii D1279779

54.523

98.759

0.538
  pilC Legionella pneumophila strain ERS1305867

51.128

99.007

0.506
  pilC Vibrio cholerae strain A1552

44.612

99.007

0.442
  pilC Vibrio campbellii strain DS40M4

43.781

99.752

0.437
  pilG Neisseria meningitidis 44/76-A

45.17

95.037

0.429
  pilG Neisseria gonorrhoeae MS11

44.909

95.037

0.427

Multiple sequence alignment