Detailed information NTG1094565

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACLBLI_RS14125
• Genome accession: NZ_CP180210
• Coordinates: 3223241..3224125 (+)
• Length: 294 a.a.
• NCBI ID: WP_414828231.1
• Uniprot ID: -
• Organism: Alteromonas sp. H39
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3218241..3229125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLBLI_RS14100 (ACLBLI_14100)	ampD	3219049..3219612 (-)	564	WP_414828226.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ACLBLI_RS14105 (ACLBLI_14105)	-	3219740..3220249 (+)	510	WP_414828227.1	TIGR02281 family clan AA aspartic protease	-
ACLBLI_RS14110 (ACLBLI_14110)	nadC	3220268..3221125 (+)	858	WP_414828228.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACLBLI_RS14115 (ACLBLI_14115)	-	3221366..3221806 (+)	441	WP_414828229.1	pilin	-
ACLBLI_RS14120 (ACLBLI_14120)	pilC	3221898..3223109 (+)	1212	WP_414828230.1	type II secretion system F family protein	Machinery gene
ACLBLI_RS14125 (ACLBLI_14125)	pilD	3223241..3224125 (+)	885	WP_414828231.1	prepilin peptidase	Machinery gene
ACLBLI_RS14130 (ACLBLI_14130)	coaE	3224125..3224733 (+)	609	WP_414828232.1	dephospho-CoA kinase	-
ACLBLI_RS14135 (ACLBLI_14135)	zapD	3225089..3225841 (+)	753	WP_414828233.1	cell division protein ZapD	-
ACLBLI_RS14140 (ACLBLI_14140)	yacG	3226226..3226453 (+)	228	WP_414828234.1	DNA gyrase inhibitor YacG	-
ACLBLI_RS14145 (ACLBLI_14145)	-	3226463..3227326 (+)	864	WP_414828235.1	aspartoacylase	-
ACLBLI_RS14150 (ACLBLI_14150)	mutT	3227536..3227931 (-)	396	WP_414828236.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 32619.74 Da
• Isoelectric Point: 7.6824

>NTDB_id=1094565 ACLBLI_RS14125 WP_414828231.1 3223241..3224125(+) (pilD) [Alteromonas sp. H39]
MLESVVSLSLQMPAFFYSVVFIVSLMVGSFLNVVIHRLPIMMERSWKQEYHNYFSSDDEIQPTESETFNLIKPDSTCPKC
KHKIRAWENIPLISYMLLRGKCAACRAPISVRYPLVELFTAITCTFAAWHFGPSVQALWAVLFSFVLIALLFIDLDKMLL
PDQLTLPLLWLGLLLSANSVFVGPTDAIVGAAAGYLSLWSVYWAFKLLTGKEGMGYGDFKLLAALGAFTGWQGLPVIILL
SSLVGAIAGIAIMVFQNKGKSLAIPFGPYLAVAGWITLLHKDNIIQTYLNWVLG

Nucleotide

• Length: 885 bp

>NTDB_id=1094565 ACLBLI_RS14125 WP_414828231.1 3223241..3224125(+) (pilD) [Alteromonas sp. H39]
ATGTTGGAATCTGTTGTTTCACTAAGTCTGCAAATGCCGGCGTTCTTCTACAGTGTTGTTTTTATTGTCAGCCTCATGGT
TGGCAGTTTTCTGAATGTAGTTATACACCGCCTCCCGATAATGATGGAGCGCAGTTGGAAACAGGAATATCACAACTACT
TTTCATCCGACGACGAGATACAACCCACCGAATCAGAAACCTTCAACCTGATTAAGCCTGACAGCACCTGCCCGAAGTGC
AAGCATAAAATCAGAGCCTGGGAGAATATTCCGCTAATCAGCTACATGTTACTTCGAGGCAAATGCGCCGCCTGCCGGGC
TCCTATATCTGTACGCTATCCGCTGGTCGAGTTATTCACGGCCATAACCTGTACTTTCGCAGCCTGGCACTTTGGTCCGT
CTGTGCAGGCGCTATGGGCTGTACTGTTTAGTTTTGTACTGATAGCCCTGTTATTTATCGATCTTGATAAAATGCTGCTG
CCCGACCAGCTCACGTTGCCGCTGTTATGGCTGGGTTTATTGCTTAGCGCAAACTCCGTTTTCGTTGGGCCTACCGACGC
GATTGTAGGCGCAGCCGCAGGCTATTTAAGTTTGTGGTCGGTTTACTGGGCGTTTAAATTACTCACTGGCAAGGAAGGCA
TGGGCTATGGCGATTTTAAATTACTCGCAGCCCTTGGTGCATTCACTGGCTGGCAAGGTTTGCCGGTGATTATTTTGCTG
TCTTCACTGGTGGGCGCTATCGCCGGCATCGCGATTATGGTTTTTCAGAATAAAGGGAAATCACTGGCGATACCGTTCGG
CCCGTATCTGGCGGTAGCAGGCTGGATCACCCTGCTCCATAAAGATAATATTATTCAAACCTACCTCAATTGGGTGCTTG
GATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-131)

• Type IV leader peptidase family (Peptidase_A24) (143-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	55.83	96.259	0.537
pilD	Vibrio cholerae strain A1552	55.674	95.918	0.534
pilD	Neisseria gonorrhoeae MS11	51.282	92.857	0.476
pilD	Acinetobacter baumannii D1279779	48.097	98.299	0.473
pilD	Acinetobacter nosocomialis M2	48.097	98.299	0.473