Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACMHYC_RS01990 Genome accession   NZ_CP180027
Coordinates   419403..421535 (+) Length   710 a.a.
NCBI ID   WP_171067683.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414403..426535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS01970 (ACMHYC_01970) comM 416380..417438 (+) 1059 WP_005227665.1 pilus assembly protein PilM Machinery gene
  ACMHYC_RS01975 (ACMHYC_01975) pilN 417438..418094 (+) 657 WP_005227663.1 PilN domain-containing protein Machinery gene
  ACMHYC_RS01980 (ACMHYC_01980) pilO 418091..418810 (+) 720 WP_009506583.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACMHYC_RS01985 (ACMHYC_01985) pilP 418814..419341 (+) 528 WP_005227658.1 pilus assembly protein PilP Machinery gene
  ACMHYC_RS01990 (ACMHYC_01990) pilQ 419403..421535 (+) 2133 WP_171067683.1 type IV pilus secretin PilQ Machinery gene
  ACMHYC_RS01995 (ACMHYC_01995) aroK 421546..422115 (+) 570 WP_104021896.1 shikimate kinase AroK -
  ACMHYC_RS02000 (ACMHYC_02000) aroB 422135..423217 (+) 1083 WP_414659598.1 3-dehydroquinate synthase -
  ACMHYC_RS02005 (ACMHYC_02005) - 423237..424094 (+) 858 WP_199949041.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77304.91 Da        Isoelectric Point: 6.3607

>NTDB_id=1094078 ACMHYC_RS01990 WP_171067683.1 419403..421535(+) (pilQ) [Acinetobacter courvalinii isolate 2024CK-01798]
MNHAFRQFSMAAITLAVMQVASAQVSMTNIVPMNLAEQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQSLKQTSI
PVSTNEASSVEVAADDQRSRVIVNLKDAGAFTTRVEGNTFVLKINSAKPAMATPVAAVRQVQQGISNIGFQRGNQGEGLV
VIDLLGNNTPVDVQQQGSKIVVRTMGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVVTIQSAGSYEYMAYQAENKLT
ISLKRPEDKSPTKAKTQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAQAQSVKLAPLQTEYITLSYAKAADIEKLITQGKNANTNNGNSSNSISNDTLAG
GLLSPRGTISIDPRTNTLIVNDTSQKIDQIRKMVDLLDVSVKQVMIEARIVSASTDFTKEMGVKWGILSQGITKNNDLLV
GGSDTTLWNLRKPEKDSDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVM
TADKQAAKIESGKKIPYTSSTGGGANAVPKTEFIDATLSLDVTPSITPDGKVMMKLNITKDSQSTPTPTGQLTINKNQID
TNVLVDNGETVVLGGIFEQENISSQVKVPFLGDLPYVGRLFRRDLKTDNKRELLIFITPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=1094078 ACMHYC_RS01990 WP_171067683.1 419403..421535(+) (pilQ) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGATTACGCTTGCAGTGATGCAGGTGGCTTCGGCACAAGTCAGCAT
GACCAACATTGTGCCGATGAATTTGGCTGAACAAGGGACCGAGATCCGTGTCATGTTTAACGGGTTACCGCCGCAGCCAC
AAGCTTATCAGCTGGAACAGCCCGCCCGCTTGATTCTGGATTTTGATAAGGCACAACAGAGTTTAAAACAGACCTCTATT
CCTGTATCTACCAATGAAGCAAGCTCTGTTGAGGTTGCGGCAGATGATCAGCGTTCCCGCGTGATTGTAAATTTAAAAGA
TGCAGGCGCCTTTACCACCCGTGTTGAAGGTAATACTTTTGTACTGAAAATCAATTCAGCCAAACCTGCTATGGCAACGC
CGGTCGCTGCCGTTCGTCAGGTTCAACAAGGGATTTCCAATATTGGTTTCCAGCGTGGCAACCAGGGTGAAGGTCTGGTG
GTGATTGATTTGCTTGGCAATAACACGCCGGTCGATGTGCAACAGCAAGGCAGTAAAATTGTTGTGCGGACCATGGGTAA
TAAAATCCCGACCCATTTGGCCCGCCGTCTTAATACCAATGACTTTGCTACGCCTGTTGCCAGTATTGATGCCTATAATG
ATAAAGGCAATGGCGTAGTAACGATTCAGTCTGCAGGCAGCTATGAATATATGGCCTATCAGGCAGAGAATAAACTGACC
ATCAGTTTAAAGCGTCCTGAAGATAAATCGCCAACCAAGGCCAAGACCCAAACCTATACTGGCAATAAGATTTCTTTAGA
TTTCCAGGATATTGAAGTACGTCGTGTCTTGCAGTTACTGGCTGACTTTACCGGTATCAATATGGTCGCCGCAGATACCG
TACAGGGCAACATCACCTTACGCCTTAAAGATGTGCCATGGGATCAGGCTCTGGATATTGTTCTGAAAACCAAGAATCTG
GACAAACGTCGTAACGGCAATGTGATCTGGATTGCACCGGTTTCAGAACTGATTAAGGCAGAGGAAGAAGAAGCCAAAGC
GCAGGCGCAAAGCGTGAAACTGGCGCCGCTGCAAACCGAATATATTACCTTAAGTTATGCAAAAGCAGCCGATATTGAAA
AGCTGATTACTCAAGGCAAAAATGCCAATACCAACAATGGTAATTCTTCCAACTCGATCAGTAATGACACCTTGGCGGGT
GGTCTGTTAAGTCCACGAGGAACCATCTCGATTGATCCGCGAACCAATACTCTAATTGTGAATGATACTTCACAGAAGAT
TGACCAGATCCGTAAGATGGTTGACCTGCTGGATGTATCAGTGAAACAGGTGATGATTGAAGCACGTATTGTCAGTGCCA
GTACCGATTTCACCAAAGAGATGGGAGTGAAATGGGGCATCCTGTCGCAGGGGATCACCAAAAATAATGACCTGTTGGTC
GGTGGTAGTGATACAACCCTATGGAACTTAAGAAAGCCTGAGAAAGATAGTGATACAGGGGGCTGGAAATATGAAATTGA
ACGCCCGGATAACCTGAATGTCGACTTGGGTGCAGTTACGCCAGGTGCAAGCCGTATTGCCTTTGGCTTGATCAGTCTTT
CTGACTTTATGCTGGACTTAGAGCTTTCGGCAGTACAGGCCGATGGCTATGGTGAAGTGATTTCGACACCGAAAGTCATG
ACCGCTGACAAGCAGGCGGCCAAAATTGAATCGGGTAAGAAAATTCCGTATACCTCATCAACGGGCGGTGGTGCGAATGC
GGTGCCTAAAACAGAGTTTATTGACGCGACCTTGAGTCTGGATGTAACGCCAAGCATTACCCCAGACGGTAAGGTGATGA
TGAAACTGAACATTACCAAAGACTCGCAAAGTACCCCGACCCCGACAGGCCAGCTCACCATCAATAAAAACCAGATCGAT
ACCAATGTACTGGTCGATAATGGTGAAACCGTGGTGCTTGGCGGTATTTTTGAGCAGGAAAATATCAGTTCTCAGGTCAA
AGTGCCGTTCCTTGGTGACTTGCCTTATGTCGGGCGTTTATTCCGCCGTGACCTAAAAACAGATAATAAACGTGAACTGC
TTATTTTTATTACGCCGAGAATTGTTAATGACACTTTGACTAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(37-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-443)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(544-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.103

100

0.769
  pilQ Acinetobacter baumannii strain A118

74.966

100

0.768
  comQ Acinetobacter baylyi ADP1

72.867

100

0.734
  pilQ Pseudomonas aeruginosa PAK

42.836

97.324

0.417
  pilQ Legionella pneumophila strain ERS1305867

38.407

99.014

0.38
  pilQ Legionella pneumophila strain Lp02

38.265

99.014

0.379

Multiple sequence alignment