Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACMHYC_RS01975 Genome accession   NZ_CP180027
Coordinates   417438..418094 (+) Length   218 a.a.
NCBI ID   WP_005227663.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412438..423094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS01960 (ACMHYC_01960) - 412788..413606 (+) 819 WP_005227667.1 methyltransferase -
  ACMHYC_RS01965 (ACMHYC_01965) ponA 413622..416216 (-) 2595 WP_081401585.1 penicillin-binding protein PBP1a -
  ACMHYC_RS01970 (ACMHYC_01970) comM 416380..417438 (+) 1059 WP_005227665.1 pilus assembly protein PilM Machinery gene
  ACMHYC_RS01975 (ACMHYC_01975) pilN 417438..418094 (+) 657 WP_005227663.1 PilN domain-containing protein Machinery gene
  ACMHYC_RS01980 (ACMHYC_01980) pilO 418091..418810 (+) 720 WP_009506583.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACMHYC_RS01985 (ACMHYC_01985) pilP 418814..419341 (+) 528 WP_005227658.1 pilus assembly protein PilP Machinery gene
  ACMHYC_RS01990 (ACMHYC_01990) pilQ 419403..421535 (+) 2133 WP_171067683.1 type IV pilus secretin PilQ Machinery gene
  ACMHYC_RS01995 (ACMHYC_01995) aroK 421546..422115 (+) 570 WP_104021896.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24119.50 Da        Isoelectric Point: 6.0130

>NTDB_id=1094075 ACMHYC_RS01975 WP_005227663.1 417438..418094(+) (pilN) [Acinetobacter courvalinii isolate 2024CK-01798]
MAKINLLPWRDELREQRKKQFVAFCVGVAALGVASVFSGWMYFDHKLSDQEQANQLIVSTNQNLDTQLKALDGLQERRNA
IIERMKLIQGLQGQRPVTVRLVDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
VDEDKNKDKAASSLVPRVEENYGSFIVTVDLGEIGTTAEAAPASEQAASGVVAVGAAK

Nucleotide


Download         Length: 657 bp        

>NTDB_id=1094075 ACMHYC_RS01975 WP_005227663.1 417438..418094(+) (pilN) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAACGAAAGAAACAGTTTGTCGCTTTTTGTGTTGG
GGTTGCTGCATTAGGGGTTGCTTCGGTCTTTTCAGGCTGGATGTATTTTGATCATAAACTCAGTGATCAGGAACAGGCCA
ATCAGCTGATTGTGAGTACCAACCAGAATCTGGATACTCAACTGAAAGCACTGGATGGCTTGCAAGAACGCCGTAATGCG
ATTATCGAGCGTATGAAGCTGATTCAGGGTTTACAAGGACAGCGTCCGGTTACCGTACGTCTGGTGGATGAGCTGGTCCG
GGTCACACCACCGACCATGTACTTAACCAAGTTCACACGCACCGGTGATAAATTCACGATTGAAGGAAAAGCAGAAAGCC
CGAATACCGTGGCTGAACTGTTGCGTAACCTGGAAGCTTCGCCATGGTATCGCAATGCCTTCATGAATTCATTCCTGGCA
GTGGATGAAGATAAAAACAAAGATAAAGCAGCAAGTTCGCTGGTTCCTCGGGTTGAGGAAAATTATGGCAGTTTTATTGT
CACTGTCGATTTGGGTGAAATTGGTACAACGGCTGAAGCTGCACCCGCATCAGAACAGGCAGCATCAGGGGTAGTAGCAG
TGGGGGCCGCGAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.606

100

0.766
  comN Acinetobacter baylyi ADP1

77.157

90.367

0.697

Multiple sequence alignment