Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACME8E_RS20185 Genome accession   NZ_CP178917
Coordinates   4423331..4424599 (+) Length   422 a.a.
NCBI ID   WP_058710513.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain AF2927     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4418331..4429599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACME8E_RS20155 - 4419175..4419429 (+) 255 WP_013370745.1 DUF3243 domain-containing protein -
  ACME8E_RS20160 - 4419658..4420431 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  ACME8E_RS20165 - 4420462..4421556 (+) 1095 WP_013370748.1 helix-turn-helix domain-containing protein -
  ACME8E_RS20170 - 4421641..4421805 (+) 165 WP_013370749.1 hypothetical protein -
  ACME8E_RS20175 - 4421950..4422441 (+) 492 WP_013370750.1 YajQ family cyclic di-GMP-binding protein -
  ACME8E_RS20180 pgsA 4422650..4423237 (+) 588 WP_013370751.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACME8E_RS20185 cinA 4423331..4424599 (+) 1269 WP_058710513.1 competence/damage-inducible protein A Machinery gene
  ACME8E_RS20190 recA 4424826..4425887 (+) 1062 WP_025679773.1 recombinase RecA Machinery gene
  ACME8E_RS20195 - 4426098..4426847 (+) 750 WP_413985967.1 regulatory protein RecX -
  ACME8E_RS20200 rny 4427209..4428753 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46398.40 Da        Isoelectric Point: 4.7168

>NTDB_id=1092469 ACME8E_RS20185 WP_058710513.1 4423331..4424599(+) (cinA) [Paenibacillus polymyxa strain AF2927]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNMDRLQEAVRLAQKRADIILFSGGLGPTQDDLTKDA
IAAVLGRKLQIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAIGDAIAQDGKFYVVLPGPPKELKPMF
ANHAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETRLLDLIESQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVQIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVYELNLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1092469 ACME8E_RS20185 WP_058710513.1 4423331..4424599(+) (cinA) [Paenibacillus polymyxa strain AF2927]
ATGAAAGCTGAAATCATTGCAGTAGGAACAGAGTTATTACTTGGACAAATAGTAAATACAAATGCCCAATATTTGTCACA
AGAGCTAGCTACTATCGGAATTGATGTATATTTTCAGACTGTAGTTGGCGATAACATGGATCGACTTCAGGAAGCGGTAC
GTCTTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCTGGTGGGCTGGGGCCAACTCAGGACGATTTGACAAAAGATGCA
ATAGCGGCTGTACTGGGGCGAAAATTGCAGATAGATCGTCTTGCCATGGACAAGCTGGATCAGTTTTTCCGTAACCGCGG
GGTAGAAATGACCGAGAATAACCGCCGCCAGGCGCTTTCTATTGAAGGAGCTACTCCGCTTGAAAATGAGACGGGTTTAG
CTATAGGGGATGCCATTGCACAGGACGGTAAATTTTATGTGGTTTTGCCCGGACCACCTAAGGAACTTAAACCTATGTTT
GCAAATCATGCTAAACCATGGTTGCTTCAGCAGGCATTAAGCGGTGAGGAGATGCCGATTTATTCGAAAATGCTAAAATT
CGCAGGGATCGGTGAGTCAGCTCTTGAAACGCGCTTGTTAGATCTGATCGAATCCCAGACGGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGTGAGAGTGAAGCTTTAATTAAGCTGACGGCT
ACGGAAGTACAAATTCAGCAGCGTCTTTCCGAATATATGTATGCAAGTGAGGATGTTACGCTGGAGAAGGTGATTGTAGA
TTTAATGGCCAAGCGCGGACTCACTGTGAGCGCAGCGGAAAGCTGTACAGGCGGTATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGTTATTCCAATGAAATGAAGATGAAATTGCTCAATGTGCCT
TATGATTATTTGGAAGGGGATCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCAAGAAT
GATTATGGACAGCGATTTCGGACTTTCTGTTACTGGTGTAGCTGGGCCCGGATATTCCGAGCGGAAGCCAGTCGGCCTGG
TGTATATTGGTATTGCTGAGCGCGACAAGGAAACAGAAGTATATGAGCTGAATTTAAGCGGTAACCGTGAGACCATCCGT
TTGCGATCTGTCAAAGCTATCCTGTACAGATTGTGGCGCCGATTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus mitis NCTC 12261

49.512

97.156

0.481
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.02

95.735

0.46
  cinA Streptococcus mutans UA159

45.176

100

0.455
  cinA Streptococcus suis isolate S10

44.819

91.469

0.41

Multiple sequence alignment