Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACJ8W9_RS07155 | Genome accession | NZ_CP178751 |
| Coordinates | 1502157..1503392 (+) | Length | 411 a.a. |
| NCBI ID | WP_411360756.1 | Uniprot ID | - |
| Organism | Pseudidiomarina sp. YC-516-91 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1497157..1508392
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ8W9_RS07135 | ampD | 1497932..1498483 (-) | 552 | WP_411360946.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACJ8W9_RS07140 | nadC | 1498584..1499450 (+) | 867 | WP_411360753.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACJ8W9_RS07145 | - | 1499820..1500329 (+) | 510 | WP_411360754.1 | pilin | - |
| ACJ8W9_RS07150 | pilB | 1500448..1502145 (+) | 1698 | WP_411360755.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACJ8W9_RS07155 | pilC | 1502157..1503392 (+) | 1236 | WP_411360756.1 | type II secretion system F family protein | Machinery gene |
| ACJ8W9_RS07160 | - | 1503394..1504281 (+) | 888 | WP_411360757.1 | prepilin peptidase | - |
| ACJ8W9_RS07165 | coaE | 1504281..1504904 (+) | 624 | WP_411360758.1 | dephospho-CoA kinase | - |
| ACJ8W9_RS07170 | zapD | 1504906..1505748 (+) | 843 | WP_411359189.1 | cell division protein ZapD | - |
| ACJ8W9_RS07175 | mutT | 1505752..1506150 (-) | 399 | WP_411359190.1 | 8-oxo-dGTP diphosphatase MutT | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 44674.39 Da Isoelectric Point: 9.2627
>NTDB_id=1091345 ACJ8W9_RS07155 WP_411360756.1 1502157..1503392(+) (pilC) [Pseudidiomarina sp. YC-516-91]
MATAAKKSKKVDDFSEFQWQGLNKRGQKVKGIIRGDSEKEVRTKLRDQGINPRSVKKKAKPLLGHKKIKGGDIALFTRQI
ATMLEAGVPLLQSLEMVARGTDHVKVRNLMLTIADDVGSGSPLAASLRKHPGVFDQLYCDLVDSGEQSGSLESIYDRIAT
YREKSEALKAKIKKALVYPSAVIVVAIVVTMILLVYVVPQFESVFADFGAELPAMTQFVVNLSELVQAYAIYIIAGFIAA
IFLFLRAMTYNEKFRDRVQAISLKIPVIGMILNKAAVARFARTLSTTFAAGVPLISALDSAAGASGNSVYRDAILRVRDD
VTSGMQMNTAMINADVFPTMATQMVYIGEESGSLDDMLAKVADVFEREVDDLVDNLTALLEPMIMVVIGILVGGLIVAMY
LPIFNLGAVVG
MATAAKKSKKVDDFSEFQWQGLNKRGQKVKGIIRGDSEKEVRTKLRDQGINPRSVKKKAKPLLGHKKIKGGDIALFTRQI
ATMLEAGVPLLQSLEMVARGTDHVKVRNLMLTIADDVGSGSPLAASLRKHPGVFDQLYCDLVDSGEQSGSLESIYDRIAT
YREKSEALKAKIKKALVYPSAVIVVAIVVTMILLVYVVPQFESVFADFGAELPAMTQFVVNLSELVQAYAIYIIAGFIAA
IFLFLRAMTYNEKFRDRVQAISLKIPVIGMILNKAAVARFARTLSTTFAAGVPLISALDSAAGASGNSVYRDAILRVRDD
VTSGMQMNTAMINADVFPTMATQMVYIGEESGSLDDMLAKVADVFEREVDDLVDNLTALLEPMIMVVIGILVGGLIVAMY
LPIFNLGAVVG
Nucleotide
Download Length: 1236 bp
>NTDB_id=1091345 ACJ8W9_RS07155 WP_411360756.1 1502157..1503392(+) (pilC) [Pseudidiomarina sp. YC-516-91]
ATGGCTACTGCAGCAAAAAAATCAAAAAAAGTAGACGACTTCAGTGAGTTTCAATGGCAAGGATTGAACAAACGCGGCCA
AAAAGTAAAAGGTATTATTCGCGGCGATAGCGAAAAGGAAGTTCGTACCAAACTCCGCGACCAAGGTATTAATCCTCGTT
CAGTTAAGAAAAAAGCCAAGCCGCTACTCGGTCACAAGAAGATCAAGGGCGGTGATATTGCGCTCTTTACCCGACAAATC
GCCACCATGCTCGAAGCGGGTGTGCCCTTATTGCAAAGCCTCGAGATGGTTGCGCGCGGTACCGACCACGTCAAAGTGCG
CAACTTAATGCTGACCATTGCTGATGACGTCGGTTCAGGTTCGCCGCTGGCTGCATCATTGCGCAAGCATCCTGGCGTAT
TTGATCAACTTTATTGCGACTTGGTTGATTCGGGTGAACAGTCCGGCTCGCTGGAGTCGATTTATGACCGTATCGCGACC
TATCGCGAGAAATCGGAAGCACTGAAGGCAAAAATCAAAAAAGCTCTAGTCTATCCATCCGCAGTTATTGTGGTGGCTAT
CGTGGTGACCATGATTCTTTTGGTTTACGTAGTACCGCAGTTCGAGTCGGTCTTCGCGGATTTTGGTGCGGAACTGCCGG
CGATGACGCAGTTTGTGGTGAATTTATCTGAGCTAGTGCAAGCCTACGCGATTTATATTATCGCCGGCTTTATTGCCGCG
ATTTTCTTGTTCCTTCGAGCCATGACCTACAACGAGAAATTTCGCGACAGAGTCCAGGCTATTTCCCTCAAGATTCCGGT
CATCGGCATGATCCTCAATAAAGCCGCAGTCGCCCGTTTTGCTCGTACCCTGTCGACGACTTTTGCCGCCGGTGTACCGC
TAATTAGCGCACTCGATTCCGCCGCAGGTGCCTCGGGTAACTCAGTCTATCGCGATGCCATTTTACGAGTGCGCGATGAC
GTGACCTCGGGTATGCAGATGAACACGGCAATGATCAACGCAGACGTCTTCCCGACCATGGCCACGCAAATGGTCTATAT
CGGGGAAGAGTCAGGCTCCCTTGATGACATGCTGGCTAAAGTGGCCGATGTGTTTGAGCGTGAAGTCGATGACTTGGTCG
ACAACCTTACCGCCTTGCTCGAACCCATGATCATGGTGGTCATTGGTATCTTAGTCGGTGGCCTTATCGTCGCTATGTAC
TTGCCTATCTTCAACCTCGGCGCCGTGGTGGGGTAA
ATGGCTACTGCAGCAAAAAAATCAAAAAAAGTAGACGACTTCAGTGAGTTTCAATGGCAAGGATTGAACAAACGCGGCCA
AAAAGTAAAAGGTATTATTCGCGGCGATAGCGAAAAGGAAGTTCGTACCAAACTCCGCGACCAAGGTATTAATCCTCGTT
CAGTTAAGAAAAAAGCCAAGCCGCTACTCGGTCACAAGAAGATCAAGGGCGGTGATATTGCGCTCTTTACCCGACAAATC
GCCACCATGCTCGAAGCGGGTGTGCCCTTATTGCAAAGCCTCGAGATGGTTGCGCGCGGTACCGACCACGTCAAAGTGCG
CAACTTAATGCTGACCATTGCTGATGACGTCGGTTCAGGTTCGCCGCTGGCTGCATCATTGCGCAAGCATCCTGGCGTAT
TTGATCAACTTTATTGCGACTTGGTTGATTCGGGTGAACAGTCCGGCTCGCTGGAGTCGATTTATGACCGTATCGCGACC
TATCGCGAGAAATCGGAAGCACTGAAGGCAAAAATCAAAAAAGCTCTAGTCTATCCATCCGCAGTTATTGTGGTGGCTAT
CGTGGTGACCATGATTCTTTTGGTTTACGTAGTACCGCAGTTCGAGTCGGTCTTCGCGGATTTTGGTGCGGAACTGCCGG
CGATGACGCAGTTTGTGGTGAATTTATCTGAGCTAGTGCAAGCCTACGCGATTTATATTATCGCCGGCTTTATTGCCGCG
ATTTTCTTGTTCCTTCGAGCCATGACCTACAACGAGAAATTTCGCGACAGAGTCCAGGCTATTTCCCTCAAGATTCCGGT
CATCGGCATGATCCTCAATAAAGCCGCAGTCGCCCGTTTTGCTCGTACCCTGTCGACGACTTTTGCCGCCGGTGTACCGC
TAATTAGCGCACTCGATTCCGCCGCAGGTGCCTCGGGTAACTCAGTCTATCGCGATGCCATTTTACGAGTGCGCGATGAC
GTGACCTCGGGTATGCAGATGAACACGGCAATGATCAACGCAGACGTCTTCCCGACCATGGCCACGCAAATGGTCTATAT
CGGGGAAGAGTCAGGCTCCCTTGATGACATGCTGGCTAAAGTGGCCGATGTGTTTGAGCGTGAAGTCGATGACTTGGTCG
ACAACCTTACCGCCTTGCTCGAACCCATGATCATGGTGGTCATTGGTATCTTAGTCGGTGGCCTTATCGTCGCTATGTAC
TTGCCTATCTTCAACCTCGGCGCCGTGGTGGGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
58.942 |
96.594 |
0.569 |
| pilC | Acinetobacter baylyi ADP1 |
51.724 |
98.783 |
0.511 |
| pilC | Legionella pneumophila strain ERS1305867 |
53.03 |
96.35 |
0.511 |
| pilC | Acinetobacter baumannii D1279779 |
50.864 |
98.54 |
0.501 |
| pilC | Vibrio cholerae strain A1552 |
46.814 |
99.27 |
0.465 |
| pilC | Vibrio campbellii strain DS40M4 |
43.641 |
97.567 |
0.426 |
| pilG | Neisseria meningitidis 44/76-A |
42.506 |
99.027 |
0.421 |
| pilG | Neisseria gonorrhoeae MS11 |
42.506 |
99.027 |
0.421 |