Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABFT42_RS09140 Genome accession   NZ_CP178596
Coordinates   1790437..1791687 (+) Length   416 a.a.
NCBI ID   WP_413287275.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1785437..1796687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS09110 (ABFT42_09110) yfmH 1785529..1786815 (+) 1287 WP_413287273.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ABFT42_RS09115 (ABFT42_09115) ymfI 1786868..1787596 (+) 729 WP_268505721.1 elongation factor P 5-aminopentanone reductase -
  ABFT42_RS09120 (ABFT42_09120) - 1787676..1787933 (+) 258 WP_029441274.1 DUF3243 domain-containing protein -
  ABFT42_RS09125 (ABFT42_09125) - 1788063..1788854 (+) 792 WP_024121452.1 DUF3388 domain-containing protein -
  ABFT42_RS09130 (ABFT42_09130) rodZ 1788873..1789787 (+) 915 WP_411809454.1 cell shape determination protein RodZ -
  ABFT42_RS09135 (ABFT42_09135) pgsA 1789837..1790418 (+) 582 WP_413287274.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABFT42_RS09140 (ABFT42_09140) cinA 1790437..1791687 (+) 1251 WP_413287275.1 competence/damage-inducible protein A Machinery gene
  ABFT42_RS09145 (ABFT42_09145) recA 1791860..1792906 (+) 1047 WP_010334307.1 recombinase RecA Machinery gene
  ABFT42_RS09150 (ABFT42_09150) - 1793080..1794258 (+) 1179 WP_413287276.1 serine hydrolase domain-containing protein -
  ABFT42_RS09155 (ABFT42_09155) rny 1794545..1796107 (+) 1563 WP_010334309.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45414.60 Da        Isoelectric Point: 4.9745

>NTDB_id=1090309 ABFT42_RS09140 WP_413287275.1 1790437..1791687(+) (cinA) [Bacillus mojavensis strain C3]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTDHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASALFSGGVVCYSNEVKQNVLG
VNKETLDRFGAVSEQCASELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGISADGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1090309 ABFT42_RS09140 WP_413287275.1 1790437..1791687(+) (cinA) [Bacillus mojavensis strain C3]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTAGGTTCAGAACTCTTGCTTGGTCAGATTGCCAATACAAATGCTCA
ATTTATCAGCAAGCAGCTGGCAGAAATCGGAGTAAACGTATTCTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAGCGCTCTGATTTTATTATTTTTTCAGGAGGGCTCGGACCGACAAAAGATGATTTA
ACAAAAGAAACGATAGCTAATGTACTGGGACGCCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAAGCGCTTGTCATCGAAGGATCTGACGTACTGGCAAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAGATCATGATTCACGCTTTTATATGCTTCTTCCCGGACCGCCGAGTGAATTG
CGTCCGATGTTTGAAAATGAGGCTAAACCGCTTCTTCTTAAAAAGATGGGCTCAAATGAAAAAATTGTGTCAACGGTTCT
TCGCTTCTTCGGTATCGGCGAATCTCAGCTAGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATTG
CTCCATTGGCAGCGGATGGAGAGGTGACGTTGCGCCTGACAGCGAAACATGCTGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGCTACGACGATACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CAGACCTTAGCGGCGCTTCAGCGTTGTTTTCCGGCGGCGTCGTTTGCTATTCAAACGAAGTGAAGCAAAATGTGCTCGGC
GTCAATAAGGAAACATTGGACCGTTTCGGCGCAGTCAGCGAGCAATGCGCATCTGAGCTCGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTGT
TTATTGGTATTTCTGCAGATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACAGGAATTAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

95.433

100

0.954
  cinA Streptococcus mitis SK321

46.411

100

0.466
  cinA Streptococcus mitis NCTC 12261

46.411

100

0.466
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus mutans UA159

46.731

99.279

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus suis isolate S10

40.665

93.99

0.382

Multiple sequence alignment