Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLIJP_RS18620 Genome accession   NZ_CP177354
Coordinates   4183980..4185227 (+) Length   415 a.a.
NCBI ID   WP_110187298.1    Uniprot ID   -
Organism   Pokkaliibacter plantistimulans strain L1E11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4178980..4190227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIJP_RS18600 (ACLIJP_18600) - 4179861..4180487 (-) 627 WP_104155603.1 L-threonylcarbamoyladenylate synthase -
  ACLIJP_RS18605 (ACLIJP_18605) - 4180539..4181426 (-) 888 WP_110187299.1 PHP domain-containing protein -
  ACLIJP_RS18610 (ACLIJP_18610) - 4181522..4181947 (-) 426 WP_207780257.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACLIJP_RS18615 (ACLIJP_18615) pilB 4182267..4183976 (+) 1710 WP_207780256.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLIJP_RS18620 (ACLIJP_18620) pilC 4183980..4185227 (+) 1248 WP_110187298.1 type II secretion system F family protein Machinery gene
  ACLIJP_RS18625 (ACLIJP_18625) - 4185240..4186091 (+) 852 WP_110187297.1 prepilin peptidase -
  ACLIJP_RS18630 (ACLIJP_18630) coaE 4186092..4186715 (+) 624 WP_243410079.1 dephospho-CoA kinase -
  ACLIJP_RS18635 (ACLIJP_18635) yacG 4186851..4187072 (+) 222 WP_104155834.1 DNA gyrase inhibitor YacG -
  ACLIJP_RS18640 (ACLIJP_18640) - 4187091..4187471 (-) 381 WP_110187296.1 4a-hydroxytetrahydrobiopterin dehydratase -
  ACLIJP_RS18645 (ACLIJP_18645) - 4187835..4188698 (+) 864 WP_110187295.1 ribose-phosphate diphosphokinase -
  ACLIJP_RS18650 (ACLIJP_18650) - 4188664..4189335 (+) 672 WP_110187294.1 alpha-ketoglutarate-dependent dioxygenase AlkB family protein -
  ACLIJP_RS18655 (ACLIJP_18655) - 4189338..4189781 (-) 444 WP_110187293.1 flavodoxin domain-containing protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45827.89 Da        Isoelectric Point: 9.9302

>NTDB_id=1086819 ACLIJP_RS18620 WP_110187298.1 4183980..4185227(+) (pilC) [Pokkaliibacter plantistimulans strain L1E11]
MAVATQRRKKVVEKKQFTYSWSGIDRYNEKVKGEIVADSPQHAKQLLTEQQVKVKKVGKKLEIGNFKKNASIDSQDLTFF
TRQMATMMQSGVPLVQSFDISAQGMEKTKMKNLVEEIRDEVAGGNLLSIALKNHPKYFDSLFCQLVMVGEQSGTLDHMLD
RLATYKEKTEALKAKIKKALTYPTAVIVVAIIVTAILLIKVVPQFESLFKGFGADLPVFTQFVVNLSRSLQEWWWIILAI
FFATGFMLKRAHQNSEQFRHKLQLLSLKIPVVGNILHQAALARFARTLCTTYASGVPLVEAMGSAAGASGNIYYEKAILQ
AKRSVSGGQNLRTSLSITGIFPNMVIQMIGIGEDAGSLETMLDKLATFYEAAVDNAVDSLTALLEPFIMCVLGILVGGLI
IAMYLPIFKMGSVVG

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=1086819 ACLIJP_RS18620 WP_110187298.1 4183980..4185227(+) (pilC) [Pokkaliibacter plantistimulans strain L1E11]
ATGGCGGTAGCGACACAAAGGCGCAAAAAAGTGGTAGAAAAAAAGCAATTTACCTACAGTTGGAGTGGCATTGATCGCTA
CAACGAGAAAGTAAAAGGCGAAATTGTTGCTGACTCACCACAGCACGCCAAGCAGCTTCTTACCGAGCAACAAGTTAAGG
TAAAAAAAGTTGGTAAAAAACTTGAGATAGGCAATTTCAAAAAGAACGCCTCCATAGACTCTCAGGATCTTACTTTTTTC
ACCCGACAAATGGCTACCATGATGCAATCAGGGGTTCCCTTAGTGCAGTCTTTTGATATATCTGCTCAAGGAATGGAAAA
AACAAAAATGAAAAACCTCGTTGAAGAGATACGAGACGAGGTTGCTGGGGGAAACCTTCTTTCCATAGCGTTAAAAAACC
ATCCAAAGTACTTTGATTCACTATTTTGTCAATTAGTAATGGTGGGAGAACAATCAGGTACTTTAGATCATATGCTGGAC
CGCCTAGCCACATACAAAGAGAAAACTGAGGCCTTAAAGGCAAAAATAAAAAAAGCGCTTACCTACCCCACAGCAGTTAT
TGTAGTTGCCATTATTGTCACCGCAATCCTTTTAATAAAAGTTGTACCGCAGTTTGAAAGTTTATTTAAAGGCTTTGGTG
CCGATCTCCCTGTATTTACTCAATTCGTTGTAAATCTATCTAGATCACTCCAAGAGTGGTGGTGGATAATTCTAGCTATA
TTTTTTGCAACTGGATTCATGCTTAAAAGGGCCCATCAAAATAGCGAACAATTCAGACACAAACTCCAGCTATTAAGTTT
AAAAATCCCTGTAGTTGGAAATATCCTGCACCAAGCAGCACTTGCACGGTTCGCTCGGACATTGTGTACAACCTATGCAT
CGGGAGTGCCTTTAGTTGAAGCAATGGGCTCAGCAGCGGGTGCTTCAGGAAACATTTACTATGAAAAGGCCATACTTCAA
GCAAAACGTTCTGTCTCTGGAGGACAAAATCTTCGGACATCGTTGTCAATCACTGGCATTTTTCCAAATATGGTTATACA
AATGATTGGTATTGGCGAGGATGCAGGCTCGCTGGAAACCATGCTAGACAAGCTTGCCACCTTTTATGAAGCTGCGGTGG
ACAATGCAGTTGACTCTCTGACAGCACTTCTTGAACCATTTATTATGTGCGTCCTAGGAATACTTGTCGGTGGCTTAATC
ATTGCCATGTACCTCCCCATCTTTAAAATGGGTTCTGTTGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(284-406)

Type II secretion system (T2SS), protein F (T2SSF)

(80-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.5

96.386

0.535
  pilC Acinetobacter baumannii D1279779

52.12

96.627

0.504
  pilC Legionella pneumophila strain ERS1305867

52.261

95.904

0.501
  pilC Acinetobacter baylyi ADP1

50.374

96.627

0.487
  pilC Vibrio cholerae strain A1552

42.356

96.145

0.407
  pilG Neisseria gonorrhoeae MS11

40.64

97.831

0.398
  pilC Vibrio campbellii strain DS40M4

40.049

98.072

0.393
  pilG Neisseria meningitidis 44/76-A

40.049

98.072

0.393

Multiple sequence alignment