Detailed information NTG1086040

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: ACJWMD_RS09580
• Genome accession: NZ_CP177182
• Coordinates: 2007749..2008849 (-)
• Length: 366 a.a.
• NCBI ID: WP_139053029.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain MRD6060
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2002749..2013849

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJWMD_RS09540	-	2003358..2003555 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
ACJWMD_RS09545	-	2003806..2004999 (-)	1194	WP_002885831.1	acetate kinase	-
ACJWMD_RS09550	comYH	2005056..2006012 (-)	957	WP_002887012.1	class I SAM-dependent methyltransferase	Machinery gene
ACJWMD_RS09555	comGG	2006057..2006374 (-)	318	WP_002887013.1	competence type IV pilus minor pilin ComGG	-
ACJWMD_RS09560	comYF	2006352..2006789 (-)	438	WP_002887014.1	competence type IV pilus minor pilin ComGF	Machinery gene
ACJWMD_RS09565	comGE	2006776..2007006 (-)	231	WP_002887015.1	competence type IV pilus minor pilin ComGE	-
ACJWMD_RS09570	comYD	2007038..2007466 (-)	429	WP_254593949.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACJWMD_RS09575	comYC	2007426..2007740 (-)	315	WP_170314557.1	competence type IV pilus major pilin ComGC	Machinery gene
ACJWMD_RS09580	comYB	2007749..2008849 (-)	1101	WP_139053029.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACJWMD_RS09585	comGA/cglA/cilD	2008731..2009672 (-)	942	WP_002887018.1	competence type IV pilus ATPase ComGA	Machinery gene
ACJWMD_RS09590	-	2009751..2010113 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41588.73 Da
• Isoelectric Point: 10.1478

>NTDB_id=1086040 ACJWMD_RS09580 WP_139053029.1 2007749..2008849(-) (comYB) [Streptococcus salivarius strain MRD6060]
MPVKISKAIRQPAGTSSWKAWLNKDISLKGISKGKKLKINQQLKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFAAVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKENWAVQLVQIFPQLFFATLCGLLVLSLILYLWVKRQPALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGIDLLDLVALMKEQKSKLFRELGADLEEALMLGQSFPDRIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFVIVAVVIVMIYAAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=1086040 ACJWMD_RS09580 WP_139053029.1 2007749..2008849(-) (comYB) [Streptococcus salivarius strain MRD6060]
TTGCCAGTGAAAATTTCCAAAGCCATTCGTCAACCAGCTGGAACCAGCAGTTGGAAGGCTTGGTTAAACAAGGATATCTC
ACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAACTCAAGGTTATCCAGCTTTTCAAACAACTTTTAA
AGGCAGGGTTTACCTTGACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGTTGAAAGAATCATCATTGTCTCTTATG
AAAGCGAGTTTAATGCGAGGCGACAGGTTGGACCAGATGTTTGCGGCAGTGGGCTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAACCTTCTAGGGAGTTTAACCAAGATTGAAACCTATATGCTTCGTATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCGACCTACCCTATTCTACTTCTGGGTTTCCTGATTCTGATTATGTTGGGGCTCAAAAAT
TATCTTTTACCTCAACTGTTAGAGGGGGATGGTAAGGAGAATTGGGCTGTACAGTTGGTTCAGATTTTTCCCCAGCTCTT
TTTTGCGACTTTGTGCGGACTTCTTGTATTAAGCTTAATTCTCTACCTATGGGTCAAACGCCAGCCAGCTCTTGTCTTTT
ATCGACGAATGGCAAAAATCCCTTTTATAGGGCAAACTGTCAGGCTATATACGACTGCCTATTATGCTAGGGAATGGGGA
AATCTCTTAGGGCAAGGTATTGACTTGCTAGACTTAGTTGCTCTAATGAAAGAGCAAAAGTCCAAGCTTTTTCGTGAGCT
GGGGGCTGATTTAGAAGAAGCCTTGATGCTAGGACAGAGTTTTCCTGACCGTATTGCTAGTCACCCTTTCTTCACTAAGG
AACTATCCTTAATTATTGCTTATGGAGAGGCTAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.81	93.716	0.514
comYB	Streptococcus mutans UA159	54.81	93.716	0.514
comYB	Streptococcus gordonii str. Challis substr. CH1	51.312	93.716	0.481
comGB/cglB	Streptococcus mitis NCTC 12261	49.853	92.623	0.462
comGB/cglB	Streptococcus mitis SK321	49.112	92.35	0.454
comGB/cglB	Streptococcus pneumoniae Rx1	48.817	92.35	0.451
comGB/cglB	Streptococcus pneumoniae D39	48.817	92.35	0.451
comGB/cglB	Streptococcus pneumoniae R6	48.817	92.35	0.451
comGB/cglB	Streptococcus pneumoniae TIGR4	48.817	92.35	0.451
comGB	Lactococcus lactis subsp. cremoris KW2	44.377	89.891	0.399