Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLBNB_RS27270 Genome accession   NZ_CP177156
Coordinates   5984113..5985330 (+) Length   405 a.a.
NCBI ID   WP_135006961.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain YL-21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5979113..5990330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBNB_RS27255 (ACLBNB_27255) - 5979567..5982485 (+) 2919 WP_206426764.1 DUF748 domain-containing protein -
  ACLBNB_RS27260 (ACLBNB_27260) - 5982688..5983044 (-) 357 WP_009050906.1 BON domain-containing protein -
  ACLBNB_RS27265 (ACLBNB_27265) - 5983332..5983748 (-) 417 WP_009050907.1 pilin -
  ACLBNB_RS27270 (ACLBNB_27270) pilC 5984113..5985330 (+) 1218 WP_135006961.1 type II secretion system F family protein Machinery gene
  ACLBNB_RS27275 (ACLBNB_27275) pilD 5985333..5986205 (+) 873 WP_009050909.1 prepilin peptidase Machinery gene
  ACLBNB_RS27280 (ACLBNB_27280) coaE 5986202..5986825 (+) 624 WP_151264653.1 dephospho-CoA kinase -
  ACLBNB_RS27285 (ACLBNB_27285) yacG 5986822..5987025 (+) 204 WP_009045670.1 DNA gyrase inhibitor YacG -
  ACLBNB_RS27290 (ACLBNB_27290) - 5987030..5987245 (-) 216 WP_009050911.1 hypothetical protein -
  ACLBNB_RS27295 (ACLBNB_27295) - 5987311..5988000 (-) 690 WP_411835827.1 energy-coupling factor ABC transporter permease -
  ACLBNB_RS27300 (ACLBNB_27300) - 5987997..5988464 (-) 468 WP_016703672.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44368.14 Da        Isoelectric Point: 10.4090

>NTDB_id=1085595 ACLBNB_RS27270 WP_135006961.1 5984113..5985330(+) (pilC) [Pseudomonas chlororaphis subsp. aurantiaca strain YL-21]
MAVKAAKVSVYLWEGTDRQGSKLRGELSGHTPSLVRAQLRKQGISPARVRKKSSSLLQRTPPIKARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLLAELKQDIAAGSSFTSALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRVRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPVFTQLVIALSEFVQHWWWLLAGALLLSVFGLR
HAHRRSPRFRHWLDAGLLKLPLVAPLLYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKHAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1085595 ACLBNB_RS27270 WP_135006961.1 5984113..5985330(+) (pilC) [Pseudomonas chlororaphis subsp. aurantiaca strain YL-21]
ATGGCGGTCAAAGCAGCAAAAGTCAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGCGCGGCGAATT
GAGCGGCCATACCCCCTCGCTGGTCAGGGCCCAGTTGCGCAAGCAAGGCATCAGCCCGGCCAGGGTCAGGAAGAAATCCA
GCTCGCTGTTGCAGCGCACGCCCCCGATCAAGGCCCGCGACATCAGCCTGTTCACCCGGCAGTTGGCGACCCTGATCAAG
GCCGGCGTACCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGCTTCGATAACCCGAACATGCGCAAACTGTTGGCCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGTTTCACCAGTGCGCTGCGCAAGAGGCCGCGGTATTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGCGAGCAGGCCGGCGCCCTGGAAACCCTGCTGGAGCGAGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACCCGAGTCCGCAAGGCCATGACCTATCCCCTGGCGGTGATCTGCGTGGCGCTGGTGGTGACAGGGAT
CCTGCTGGTCAAGGTGGTGCCGCAATTCCAGTCGATGTTCCAAGGCTTCGGCGCGCAACTGCCGGTGTTCACCCAACTGG
TCATCGCCCTCTCGGAATTCGTGCAGCACTGGTGGTGGCTGCTGGCGGGCGCTCTGTTGCTCAGTGTGTTCGGCCTGCGC
CATGCCCACCGGCGCTCACCGCGCTTTCGCCACTGGCTGGACGCGGGCCTGCTGAAACTGCCATTGGTGGCGCCGCTGCT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGCACCTTGTCCACCACCTTCGCCGCCGGGGTACCGCTGGTGGAGGCCCTGG
GCTCGGTGGCCGGGGCCACCGGCAATCAGGTGTTCAAGCATGCGGTGAACCGCATCAGGCAAGACGTGGCGACCGGCATG
CAGTTGCACTTTTCCATGCGCGCGTCCGGCATTTTTCCCGGCATGGCGATCCAGATGACCGCCATCGGCGAAGAATCCGG
GGCCCTGGACGGCATGCTGGAAAAAGTCGCGATCCACTACGAGGAAGAGGTCGATACCCTGGTCGATACCCTGAGCAGTC
TCATGGAGCCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATCTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.679

100

0.657
  pilC Acinetobacter baylyi ADP1

55.392

100

0.558
  pilC Acinetobacter baumannii D1279779

55.147

100

0.556
  pilC Legionella pneumophila strain ERS1305867

52.273

97.778

0.511
  pilG Neisseria gonorrhoeae MS11

43.176

99.506

0.43
  pilG Neisseria meningitidis 44/76-A

42.432

99.506

0.422
  pilC Vibrio cholerae strain A1552

43.367

96.79

0.42
  pilC Vibrio campbellii strain DS40M4

40.05

99.259

0.398

Multiple sequence alignment