Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACLHWC_RS01790 Genome accession   NZ_CP177122
Coordinates   349777..351027 (+) Length   416 a.a.
NCBI ID   WP_193989625.1    Uniprot ID   -
Organism   Vagococcus salmoninarum strain 2022-116     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 344777..356027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLHWC_RS01770 (ACLHWC_01770) yfmF 345422..346687 (+) 1266 WP_193989622.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  ACLHWC_RS01775 (ACLHWC_01775) yfmH 346687..347991 (+) 1305 WP_193989623.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACLHWC_RS01780 (ACLHWC_01780) - 348153..349040 (+) 888 WP_193989624.1 RodZ domain-containing protein -
  ACLHWC_RS01785 (ACLHWC_01785) pgsA 349073..349651 (+) 579 WP_193989678.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLHWC_RS01790 (ACLHWC_01790) cinA 349777..351027 (+) 1251 WP_193989625.1 competence/damage-inducible protein A Machinery gene
  ACLHWC_RS01795 (ACLHWC_01795) recA 351137..352186 (+) 1050 WP_126781650.1 recombinase RecA Machinery gene
  ACLHWC_RS01800 (ACLHWC_01800) rny 352980..354536 (+) 1557 WP_126781652.1 ribonuclease Y -
  ACLHWC_RS01805 (ACLHWC_01805) - 354632..355138 (+) 507 WP_193989626.1 LysM peptidoglycan-binding domain-containing protein -
  ACLHWC_RS01810 (ACLHWC_01810) - 355155..355796 (+) 642 WP_193989627.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44786.18 Da        Isoelectric Point: 4.5166

>NTDB_id=1085427 ACLHWC_RS01790 WP_193989625.1 349777..351027(+) (cinA) [Vagococcus salmoninarum strain 2022-116]
MKAEIIAVGTELLLGQVVNTNATFLSEELAGLGFEIYYQTVVGDNPERLVETLALAETRSQLIVLCGGLGPTDDDLTRDV
VAAHVGEQLVMDEASLAKILKYVSKIGHPMTENNKRQALSISGGQVIENPTGLAIGTLYQAETVNYLLLPGPPRELYPMF
HQKAKPLLAKLLPQDYHLTSRVLRFYGIGESRLVTELAELIASQSNPTIAPYAKPNEVTLRLTAKTKELSEAETLLDQME
NEIMASVGEYFYGYGEENSLVQETVKLLIAEEQTVTCAESLTAGMLQSALGSVPGVSAVFPGGYITYSDEGKTSLLGVPG
EVLTNHGAVSEACAIAMAEGARQKMGTDFGLSLTGVAGPTEVEGQKVGTVWIGIASKNQPTIAKEYFYQRDRETIRQSSV
MAALGLLRQEILAQKA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1085427 ACLHWC_RS01790 WP_193989625.1 349777..351027(+) (cinA) [Vagococcus salmoninarum strain 2022-116]
ATGAAAGCAGAAATAATTGCCGTTGGGACAGAGTTATTACTTGGTCAAGTAGTCAATACAAATGCGACGTTTCTATCTGA
AGAATTAGCCGGTCTTGGTTTTGAAATTTATTATCAAACTGTTGTGGGAGACAATCCGGAGCGATTAGTTGAAACTTTAG
CCCTAGCAGAAACTCGTAGTCAATTGATTGTCTTATGCGGTGGCTTAGGTCCTACCGATGATGATCTCACTCGTGATGTC
GTCGCAGCCCATGTCGGTGAACAATTGGTCATGGATGAGGCATCCTTGGCTAAAATCTTAAAATACGTCTCTAAAATTGG
TCACCCAATGACTGAAAACAATAAGCGCCAAGCTTTATCGATTAGTGGCGGTCAAGTCATTGAAAATCCTACTGGCTTAG
CAATTGGTACTTTATATCAAGCTGAAACAGTCAATTATTTATTATTGCCAGGCCCACCACGGGAGTTGTATCCGATGTTT
CACCAAAAGGCCAAACCATTACTAGCTAAACTCTTGCCTCAAGATTATCACTTGACCTCACGGGTTTTACGCTTTTACGG
CATTGGTGAATCCCGGTTAGTGACTGAGCTAGCCGAACTGATAGCTAGTCAAAGTAATCCAACGATTGCCCCCTACGCGA
AACCGAATGAAGTCACCTTGCGTTTAACGGCTAAAACGAAAGAGCTAAGTGAAGCTGAAACATTACTAGATCAAATGGAA
AATGAAATTATGGCAAGTGTCGGTGAGTACTTTTATGGCTATGGGGAAGAAAATAGCTTAGTCCAAGAAACAGTCAAGTT
GTTAATTGCCGAAGAACAGACAGTGACATGTGCTGAAAGCTTAACTGCAGGTATGCTTCAGAGCGCTTTAGGTAGCGTTC
CAGGGGTTTCAGCGGTCTTTCCTGGTGGATACATCACTTACAGTGACGAAGGGAAAACTAGCCTCTTAGGGGTCCCAGGG
GAAGTCTTAACAAATCATGGAGCAGTCAGTGAAGCTTGTGCCATTGCCATGGCTGAAGGGGCGCGTCAAAAGATGGGCAC
AGATTTTGGGCTATCTTTAACTGGAGTAGCAGGTCCAACTGAAGTTGAGGGCCAGAAAGTTGGCACAGTCTGGATTGGCA
TCGCCTCTAAGAATCAGCCGACGATTGCCAAAGAGTACTTTTATCAAAGAGATCGGGAGACAATTAGACAAAGTTCCGTC
ATGGCCGCATTAGGCTTATTACGGCAAGAAATCTTGGCTCAAAAAGCCTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

49.761

100

0.5
  cinA Streptococcus pneumoniae TIGR4

47.642

100

0.486
  cinA Streptococcus pneumoniae Rx1

47.406

100

0.483
  cinA Streptococcus pneumoniae R6

47.406

100

0.483
  cinA Streptococcus pneumoniae D39

47.17

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.17

100

0.481
  cinA Streptococcus mitis SK321

46.934

100

0.478
  cinA Bacillus subtilis subsp. subtilis str. 168

44.928

99.519

0.447
  cinA Streptococcus suis isolate S10

43.272

91.106

0.394

Multiple sequence alignment