Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACLIMH_RS18330 Genome accession   NZ_CP177046
Coordinates   3560032..3561270 (-) Length   412 a.a.
NCBI ID   WP_000990712.1    Uniprot ID   A0A0B6BAH8
Organism   Bacillus thuringiensis strain MPB12     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3555032..3566270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMH_RS18305 (ACLIMH_18305) spoVS 3555115..3555375 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  ACLIMH_RS18310 (ACLIMH_18310) - 3555524..3556318 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  ACLIMH_RS18315 (ACLIMH_18315) rny 3556484..3558046 (-) 1563 WP_000099773.1 ribonuclease Y -
  ACLIMH_RS18320 (ACLIMH_18320) - 3558529..3558951 (-) 423 Protein_3543 DNA recombination/repair protein RecA -
  ACLIMH_RS18325 (ACLIMH_18325) recA 3559279..3559887 (-) 609 Protein_3544 recombinase RecA -
  ACLIMH_RS18330 (ACLIMH_18330) cinA 3560032..3561270 (-) 1239 WP_000990712.1 competence/damage-inducible protein CinA Machinery gene
  ACLIMH_RS18335 (ACLIMH_18335) pgsA 3561291..3561869 (-) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLIMH_RS18340 (ACLIMH_18340) - 3561933..3562844 (-) 912 WP_000137488.1 helix-turn-helix domain-containing protein -
  ACLIMH_RS18345 (ACLIMH_18345) - 3562866..3563651 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  ACLIMH_RS18350 (ACLIMH_18350) - 3563791..3564039 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  ACLIMH_RS18355 (ACLIMH_18355) ymfI 3564115..3564828 (-) 714 WP_000759617.1 elongation factor P 5-aminopentanone reductase -
  ACLIMH_RS18360 (ACLIMH_18360) yfmH 3564932..3566218 (-) 1287 WP_087932267.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45411.60 Da        Isoelectric Point: 4.8340

>NTDB_id=1085266 ACLIMH_RS18330 WP_000990712.1 3560032..3561270(-) (cinA) [Bacillus thuringiensis strain MPB12]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1085266 ACLIMH_RS18330 WP_000990712.1 3560032..3561270(-) (cinA) [Bacillus thuringiensis strain MPB12]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACATGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6BAH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379

Multiple sequence alignment