Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACLIMA_RS09540 Genome accession   NZ_CP177039
Coordinates   1847433..1848683 (+) Length   416 a.a.
NCBI ID   WP_003181923.1    Uniprot ID   A0A415JFS6
Organism   Bacillus licheniformis strain MPB04     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1842433..1853683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMA_RS09515 (ACLIMA_09515) ymfI 1843747..1844478 (+) 732 WP_009328491.1 elongation factor P 5-aminopentanone reductase -
  ACLIMA_RS09520 (ACLIMA_09520) - 1844549..1844806 (+) 258 WP_003181915.1 DUF3243 domain-containing protein -
  ACLIMA_RS09525 (ACLIMA_09525) - 1845054..1845845 (+) 792 WP_003181917.1 YmfK family protein -
  ACLIMA_RS09530 (ACLIMA_09530) - 1845863..1846765 (+) 903 WP_003181919.1 helix-turn-helix domain-containing protein -
  ACLIMA_RS09535 (ACLIMA_09535) pgsA 1846832..1847413 (+) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLIMA_RS09540 (ACLIMA_09540) cinA 1847433..1848683 (+) 1251 WP_003181923.1 competence/damage-inducible protein A Machinery gene
  ACLIMA_RS09545 (ACLIMA_09545) recA 1848851..1849897 (+) 1047 WP_003181926.1 recombinase RecA Machinery gene
  ACLIMA_RS09550 (ACLIMA_09550) rny 1850238..1851797 (+) 1560 WP_003181928.1 ribonuclease Y -
  ACLIMA_RS09555 (ACLIMA_09555) - 1851884..1852681 (+) 798 WP_003181930.1 TIGR00282 family metallophosphoesterase -
  ACLIMA_RS09560 (ACLIMA_09560) spoVS 1852883..1853143 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45716.00 Da        Isoelectric Point: 4.9958

>NTDB_id=1085050 ACLIMA_RS09540 WP_003181923.1 1847433..1848683(+) (cinA) [Bacillus licheniformis strain MPB04]
MKLERKAEIIAVGSELLLGQIVNTNAQFISRHLAEIGINVFYHTAVGDNPERLKQVIQTAQQRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLKLDDEAFESIQDYFKKTNREMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSREKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPEETNRLL
KETEDRILERVGEFFYGYDDTSLAEELAKACRSKGMTLAAAESFTGGLFSSWLTEMSGASEYFKGGAVCYTNELKVSAAG
VSEDTLQRYGAVSAQCAKELAAGIRVKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVKDQAEEAFEFQFAGSRSAVRK
RSAKYGCHLLLKMMEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1085050 ACLIMA_RS09540 WP_003181923.1 1847433..1848683(+) (cinA) [Bacillus licheniformis strain MPB04]
ATGAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGCTCTGAGCTTCTGCTCGGACAAATCGTTAATACAAATGCTCA
GTTTATCAGCAGGCATTTGGCCGAAATCGGCATTAACGTCTTTTATCACACGGCGGTGGGAGACAATCCGGAGCGCCTTA
AACAAGTCATTCAGACAGCGCAGCAAAGGTCTGACTTCATCATTTTTTCGGGAGGCCTCGGACCGACGAAAGACGATCTG
ACAAAAGAAACGATCGCCGAAGTTGTCGGGCGCCCTCTTAAGCTCGACGATGAAGCCTTCGAATCGATTCAGGATTACTT
CAAAAAAACGAACCGGGAGATGTCGCCGAACAACCGCAAACAGGCGCTGATCCTCGAAGGATCCGATGTTCTGCCGAACC
GCTTTGGGATGGCTCCGGGAATGCTGCTTGAGCATGAATCGCGCTTTTATATGCTTCTGCCGGGACCTCCGAAAGAGCTG
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTGATTTTGGAAAAGCTCGGCTCGAGGGAAAAGATCGTGTCAAGGGTGCT
GCGCTTCTTCGGCATCGGTGAATCCCAGCTTGAAACCGATTTGGAAGATCTCATCGATGCGCAGACTAATCCGACAATCG
CTCCGCTTGCGGCAGACGGGGAAGTCACGCTCAGGCTTACGGCAAAGCATGCGGATCCGGAGGAGACAAACCGCTTGTTA
AAAGAAACGGAAGACCGCATTTTGGAGCGGGTCGGAGAATTCTTTTACGGGTATGATGATACATCCCTCGCAGAAGAGCT
TGCGAAAGCATGCCGGAGCAAGGGTATGACTCTGGCTGCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCAGCTGGCTGA
CGGAAATGAGCGGCGCTTCCGAATATTTCAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTGTCAGCGGCCGGC
GTTTCGGAAGACACGCTGCAGCGCTATGGTGCGGTCAGCGCGCAATGCGCTAAAGAGCTCGCCGCAGGCATCAGAGTCAA
GACAGGAAGCGATATCGGCATCAGCTTCACTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCTGGAAAGGTGT
TTATCGGCATCTCCGTGAAGGACCAGGCTGAGGAAGCGTTCGAATTTCAGTTCGCCGGATCCAGGTCTGCGGTGCGGAAG
CGTTCTGCCAAATACGGCTGCCATCTGTTGCTGAAAATGATGGAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415JFS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

76.442

100

0.764
  cinA Streptococcus pneumoniae TIGR4

47.733

100

0.481
  cinA Streptococcus mitis SK321

47.255

100

0.476
  cinA Streptococcus pneumoniae R6

47.255

100

0.476
  cinA Streptococcus pneumoniae Rx1

47.255

100

0.476
  cinA Streptococcus mitis NCTC 12261

47.255

100

0.476
  cinA Streptococcus pneumoniae D39

47.017

100

0.474
  cinA Streptococcus mutans UA159

46.829

98.558

0.462
  cinA Streptococcus suis isolate S10

41.414

95.192

0.394

Multiple sequence alignment