Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACLIMC_RS18610 Genome accession   NZ_CP177035
Coordinates   3613894..3615132 (-) Length   412 a.a.
NCBI ID   WP_042510901.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain MPB08     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3608894..3620132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMC_RS18585 (ACLIMC_18585) spoVS 3608976..3609236 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  ACLIMC_RS18590 (ACLIMC_18590) - 3609385..3610179 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  ACLIMC_RS18595 (ACLIMC_18595) rny 3610345..3611907 (-) 1563 WP_000099773.1 ribonuclease Y -
  ACLIMC_RS18600 (ACLIMC_18600) - 3612390..3612812 (-) 423 Protein_3607 DNA recombination/repair protein RecA -
  ACLIMC_RS18605 (ACLIMC_18605) recA 3613140..3613748 (-) 609 Protein_3608 recombinase RecA -
  ACLIMC_RS18610 (ACLIMC_18610) cinA 3613894..3615132 (-) 1239 WP_042510901.1 competence/damage-inducible protein CinA Machinery gene
  ACLIMC_RS18615 (ACLIMC_18615) pgsA 3615153..3615731 (-) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLIMC_RS18620 (ACLIMC_18620) - 3615795..3616706 (-) 912 WP_000137488.1 helix-turn-helix domain-containing protein -
  ACLIMC_RS18625 (ACLIMC_18625) - 3616728..3617513 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  ACLIMC_RS18630 (ACLIMC_18630) - 3617653..3617901 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  ACLIMC_RS18635 (ACLIMC_18635) ymfI 3617977..3618690 (-) 714 WP_411500931.1 elongation factor P 5-aminopentanone reductase -
  ACLIMC_RS18640 (ACLIMC_18640) yfmH 3618794..3620080 (-) 1287 WP_000411954.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45444.67 Da        Isoelectric Point: 4.8383

>NTDB_id=1084994 ACLIMC_RS18610 WP_042510901.1 3613894..3615132(-) (cinA) [Bacillus thuringiensis strain MPB08]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQELIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1084994 ACLIMC_RS18610 WP_042510901.1 3613894..3615132(-) (cinA) [Bacillus thuringiensis strain MPB08]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGAGTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACGTGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.537

99.515

0.583
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379

Multiple sequence alignment