Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACK3B6_RS09245 Genome accession   NZ_CP176792
Coordinates   1806706..1807956 (+) Length   416 a.a.
NCBI ID   WP_059352925.1    Uniprot ID   -
Organism   Bacillus halotolerans strain BCP32     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1801706..1812956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS09215 (ACK3B6_09215) yfmH 1801795..1803081 (+) 1287 WP_202853042.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACK3B6_RS09220 (ACK3B6_09220) ymfI 1803134..1803862 (+) 729 WP_105954258.1 elongation factor P 5-aminopentanone reductase -
  ACK3B6_RS09225 (ACK3B6_09225) - 1803942..1804199 (+) 258 WP_024121451.1 DUF3243 domain-containing protein -
  ACK3B6_RS09230 (ACK3B6_09230) - 1804329..1805120 (+) 792 WP_024121452.1 DUF3388 domain-containing protein -
  ACK3B6_RS09235 (ACK3B6_09235) rodZ 1805139..1806056 (+) 918 WP_105954259.1 cell shape determination protein RodZ -
  ACK3B6_RS09240 (ACK3B6_09240) pgsA 1806106..1806687 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACK3B6_RS09245 (ACK3B6_09245) cinA 1806706..1807956 (+) 1251 WP_059352925.1 competence/damage-inducible protein A Machinery gene
  ACK3B6_RS09250 (ACK3B6_09250) recA 1808129..1809175 (+) 1047 WP_099042952.1 recombinase RecA Machinery gene
  ACK3B6_RS09255 (ACK3B6_09255) - 1809326..1810678 (-) 1353 WP_416042739.1 IS1182 family transposase -
  ACK3B6_RS09260 (ACK3B6_09260) - 1810924..1812102 (+) 1179 WP_202853736.1 serine hydrolase domain-containing protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45442.70 Da        Isoelectric Point: 5.0594

>NTDB_id=1082994 ACK3B6_RS09245 WP_059352925.1 1806706..1807956(+) (cinA) [Bacillus halotolerans strain BCP32]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASALFSGGVVCYSNEVKQNVLG
VKKETLDRFGAVSEECASELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1082994 ACK3B6_RS09245 WP_059352925.1 1806706..1807956(+) (cinA) [Bacillus halotolerans strain BCP32]
ATGGAATTTCCAAAAAAAGCAGAGATTATTGCAGTCGGTTCAGAGCTCTTACTTGGTCAGATTGCTAATACAAATGCTCA
ATTTATCAGCAAACAGCTGGCAGAAATCGGAGTAAACGTATTTTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAGCGCTCTGATTTTATTATTTTTTCCGGAGGGCTCGGGCCGACAAAAGATGATTTA
ACAAAAGAAACGATAGCAAATGTGCTGGGACGTCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTCATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAGAGCATGATTCGCGCTTTTATATGCTTCTTCCCGGGCCGCCGAGCGAATTG
CGTCCGATGTTTGAAAATGAGGCAAAACCGCTTCTTCTTAAAAAGATGGGCTCCAATGAAAAAATTGTATCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATCG
CTCCGTTGGCAGCGGACGGCGAGGTGACGCTTCGCCTGACAGCGAAACATGCCGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGCTACGACGATACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCCGAATGGCTGA
CAGACCTTAGCGGCGCTTCAGCATTGTTTTCCGGCGGCGTTGTTTGCTATTCAAACGAAGTGAAGCAAAATGTCCTCGGC
GTCAAAAAGGAAACATTGGACCGCTTCGGCGCAGTCAGCGAGGAATGCGCATCTGAGCTCGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTAT
TTATCGGTATTTCTGCAAACGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCAGGCTCCAGAACAGGAATCAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

96.394

100

0.964
  cinA Streptococcus mitis SK321

46.651

100

0.469
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.973

99.279

0.466
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus suis isolate S10

41.176

93.99

0.387

Multiple sequence alignment