Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACK1LH_RS09780 Genome accession   NZ_CP176757
Coordinates   1956086..1957348 (+) Length   420 a.a.
NCBI ID   WP_203290182.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1951086..1962348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS09750 (ACK1LH_09750) yfmH 1951169..1952455 (+) 1287 WP_029281207.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACK1LH_RS09755 (ACK1LH_09755) ymfI 1952511..1953224 (+) 714 WP_411335005.1 elongation factor P 5-aminopentanone reductase -
  ACK1LH_RS09760 (ACK1LH_09760) - 1953305..1953562 (+) 258 WP_029281204.1 DUF3243 domain-containing protein -
  ACK1LH_RS09765 (ACK1LH_09765) - 1953731..1954516 (+) 786 WP_029281202.1 YmfK family protein -
  ACK1LH_RS09770 (ACK1LH_09770) - 1954538..1955416 (+) 879 WP_411335006.1 helix-turn-helix domain-containing protein -
  ACK1LH_RS09775 (ACK1LH_09775) pgsA 1955492..1956070 (+) 579 WP_029281198.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACK1LH_RS09780 (ACK1LH_09780) cinA 1956086..1957348 (+) 1263 WP_203290182.1 competence/damage-inducible protein A Machinery gene
  ACK1LH_RS09785 (ACK1LH_09785) recA 1957603..1958640 (+) 1038 WP_029281194.1 recombinase RecA Machinery gene
  ACK1LH_RS09790 (ACK1LH_09790) rny 1959020..1960582 (+) 1563 WP_029281192.1 ribonuclease Y -
  ACK1LH_RS09795 (ACK1LH_09795) - 1960702..1961496 (+) 795 WP_029281190.1 TIGR00282 family metallophosphoesterase -
  ACK1LH_RS09800 (ACK1LH_09800) spoVS 1961694..1961954 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45817.43 Da        Isoelectric Point: 6.5102

>NTDB_id=1082783 ACK1LH_RS09780 WP_203290182.1 1956086..1957348(+) (cinA) [Metabacillus indicus strain JKLC.Or24]
MHMATKTEIIAVGSELLLGQIVNSNAQFISQQLAENGINVYYHTVVGDNPGRLKQAVKTAQERSNIIVFTGGLGPTKDDL
TKETIASMLGRKLATDEEALRSIEDYFVKVNRPMSENNKKQALVIEGSDILKNEHGMAPGMAIQENGIIYMLLPGPPSEM
KPMFLKFGLPFFRKALGRNDKIISRVLRYFGIGESQLETDIQDLIDGQSNPTIAPLAGDGEVTLRLTARHQFETEAVKLI
NDAEKAINERVGAFFYGYDQTTLAEELLRHLRQRGMTISAAESLTGGLFSDQLTAVKGTSDVFKGTIVCYTNEVKEAMLG
VSKETLDVHGAVSEQCAQEMAEQIRKLTGSDIGISFTGIAGEEPVEGKKPGTVYIGLAVKGRQTVTHQLLLAGSRNGIRK
RTVKYGCHLAVKALTENTAE

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1082783 ACK1LH_RS09780 WP_203290182.1 1956086..1957348(+) (cinA) [Metabacillus indicus strain JKLC.Or24]
ATGCACATGGCTACAAAAACAGAGATCATTGCGGTTGGATCTGAATTGCTGCTCGGGCAAATCGTCAATTCAAATGCCCA
GTTCATCTCTCAGCAGCTTGCAGAGAACGGGATTAACGTCTATTACCATACAGTGGTTGGAGATAACCCGGGCAGGCTTA
AGCAGGCAGTAAAAACAGCACAGGAACGTTCAAACATCATCGTGTTTACTGGCGGGCTCGGTCCGACGAAGGACGACCTC
ACAAAAGAAACCATCGCAAGCATGCTCGGGCGAAAACTCGCAACGGACGAGGAAGCGCTGCGCAGCATCGAAGATTATTT
TGTGAAAGTAAACCGCCCCATGTCAGAAAACAATAAAAAGCAGGCTCTTGTCATTGAGGGCTCTGATATTCTTAAAAATG
AACATGGCATGGCGCCGGGGATGGCCATTCAGGAAAACGGCATCATCTATATGCTTCTTCCCGGGCCTCCAAGTGAAATG
AAGCCGATGTTTCTTAAATTCGGACTTCCTTTTTTCAGAAAAGCACTTGGCAGAAACGATAAGATCATCTCAAGAGTTCT
CCGTTATTTCGGTATAGGGGAATCCCAGCTTGAAACGGATATTCAGGATCTGATTGACGGACAATCCAACCCTACAATTG
CTCCTCTTGCGGGTGACGGGGAAGTGACCTTACGACTGACAGCAAGGCATCAGTTTGAAACTGAAGCTGTCAAACTGATC
AACGATGCTGAAAAGGCGATAAATGAAAGAGTCGGCGCGTTTTTCTACGGATATGATCAGACGACACTTGCAGAAGAGCT
ATTAAGGCACCTGAGGCAGCGGGGAATGACCATTTCTGCAGCTGAAAGCCTGACAGGAGGGCTGTTCTCAGATCAGCTTA
CAGCCGTTAAAGGCACGTCGGACGTTTTTAAAGGAACGATTGTGTGCTATACAAATGAAGTGAAGGAAGCCATGCTCGGA
GTATCGAAAGAAACGCTTGATGTTCATGGTGCCGTCAGCGAACAATGTGCACAAGAGATGGCAGAGCAGATCAGAAAGCT
GACAGGGAGCGATATCGGAATAAGCTTCACAGGCATAGCAGGCGAAGAGCCTGTTGAAGGAAAGAAACCCGGCACTGTTT
ATATAGGTCTTGCCGTAAAGGGCAGGCAGACAGTAACGCATCAGCTCCTGCTTGCAGGAAGCAGGAACGGCATACGCAAG
CGAACAGTTAAATACGGCTGCCATCTTGCGGTAAAAGCTTTAACAGAAAATACAGCGGAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-173)

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

62.26

99.048

0.617
  cinA Streptococcus pneumoniae TIGR4

45.694

99.524

0.455
  cinA Streptococcus mitis SK321

45.476

100

0.455
  cinA Streptococcus mitis NCTC 12261

45.238

100

0.452
  cinA Streptococcus mutans UA159

45.783

98.81

0.452
  cinA Streptococcus pneumoniae Rx1

45.215

99.524

0.45
  cinA Streptococcus pneumoniae R6

45.215

99.524

0.45
  cinA Streptococcus pneumoniae D39

44.976

99.524

0.448
  cinA Streptococcus suis isolate S10

40.584

89.762

0.364

Multiple sequence alignment