Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACK2WA_RS07665 Genome accession   NZ_CP176674
Coordinates   1496141..1497388 (-) Length   415 a.a.
NCBI ID   WP_153648134.1    Uniprot ID   -
Organism   Listeria innocua strain GTVSS-019     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1491141..1502388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WA_RS07640 (ACK2WA_07640) - 1491162..1491524 (-) 363 WP_003762190.1 RicAFT regulatory complex protein RicA family protein -
  ACK2WA_RS07645 (ACK2WA_07645) - 1491541..1492344 (-) 804 WP_003762187.1 TIGR00282 family metallophosphoesterase -
  ACK2WA_RS07650 (ACK2WA_07650) - 1492349..1492846 (-) 498 WP_003771777.1 GNAT family N-acetyltransferase -
  ACK2WA_RS07655 (ACK2WA_07655) rny 1492962..1494524 (-) 1563 WP_003721904.1 ribonuclease Y -
  ACK2WA_RS07660 (ACK2WA_07660) recA 1494825..1495871 (-) 1047 WP_003766841.1 recombinase RecA Machinery gene
  ACK2WA_RS07665 (ACK2WA_07665) cinA 1496141..1497388 (-) 1248 WP_153648134.1 competence/damage-inducible protein A Machinery gene
  ACK2WA_RS07670 (ACK2WA_07670) pgsA 1497455..1498033 (-) 579 WP_003762173.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACK2WA_RS07675 (ACK2WA_07675) - 1498123..1499058 (-) 936 WP_153648135.1 helix-turn-helix domain-containing protein -
  ACK2WA_RS07680 (ACK2WA_07680) ymfI 1499107..1499838 (-) 732 WP_112119849.1 elongation factor P 5-aminopentanone reductase -
  ACK2WA_RS07685 (ACK2WA_07685) yfmH 1499938..1501224 (-) 1287 WP_153648136.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45583.77 Da        Isoelectric Point: 4.8027

>NTDB_id=1082233 ACK2WA_RS07665 WP_153648134.1 1496141..1497388(-) (cinA) [Listeria innocua strain GTVSS-019]
MASAEIIAVGTELLLGQIVNSNAAFISEELAANGIYVYHHTVVGDNPKRLKDVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILAEHLQKNLVEDAFHMNKITEYFASRNRTMTENNKLQAVIIEGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FSSYAEPLLVSESAEKNVLESKIMRFFGIGESQLAADLNDMILAQVNPTIATYAGDNEVVVRITATAKTKEEASALVNET
EQEILHRDGTFLYGYGEVSLPELVTAMLLEKNITISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILEVSP
QTIKENGVVSSECAKEMAKNVSRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLHVAGFETEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=1082233 ACK2WA_RS07665 WP_153648134.1 1496141..1497388(-) (cinA) [Listeria innocua strain GTVSS-019]
ATGGCAAGCGCGGAAATTATCGCAGTTGGAACAGAACTTTTACTAGGACAAATCGTGAACTCTAATGCTGCTTTTATTTC
AGAAGAATTAGCAGCTAACGGGATTTATGTCTACCATCACACTGTCGTTGGTGACAACCCTAAACGTTTAAAAGATGTAA
TAGAAATTGCTGAAAAACGCAGTGATATTCTCATTTTCACGGGTGGATTAGGTCCTACAGAAGATGATATTACGAAACAA
ATTTTAGCAGAACACCTACAGAAAAACTTAGTAGAAGATGCGTTTCATATGAACAAAATCACGGAGTATTTTGCTTCAAG
AAATAGAACAATGACGGAAAATAACAAATTGCAAGCTGTAATTATTGAAGGATCTACTGTATTAAATAATGATTATGGCT
TTGCTGCAGGAATGTTCTTAAAAGAAAATAATCATACGTACATCTTACTTCCAGGCCCACCTTCAGAAATGAAACCGATG
TTTTCGAGTTATGCTGAACCTTTACTCGTAAGTGAAAGTGCTGAGAAAAATGTGTTAGAGTCTAAAATAATGCGCTTTTT
CGGTATTGGAGAATCGCAATTAGCAGCAGATTTAAATGATATGATTTTAGCGCAAGTAAATCCTACTATTGCTACATATG
CAGGTGATAATGAAGTAGTTGTGCGGATTACTGCTACTGCAAAGACTAAAGAGGAAGCAAGTGCCCTTGTGAACGAAACG
GAACAAGAAATTTTACACAGAGATGGAACTTTTTTATACGGTTATGGCGAAGTTTCTTTACCAGAATTAGTAACAGCCAT
GCTGCTTGAAAAAAATATCACTATTTCCGCTGCTGAAAGTTTTACCGCTGGATTATTCCAAGCAGAAATTGCCCGTTTTC
CTGGTATTTCTAAAATTTTTAAAGGTGGTATGGTCACATACAGCGAAGAGACAAAACAATCTATTCTTGAAGTCTCACCT
CAAACAATAAAAGAAAATGGCGTCGTAAGTTCAGAATGCGCGAAAGAAATGGCGAAGAATGTCAGCAGACTTTGTAACAC
TGATATAGGTATTAGTTTTACCGGCGTTGCAGGACCAGACAGTCTAGAAGGACATCCGGCAGGTACTATTTGGATAGGCT
TGCATGTAGCTGGTTTTGAAACAGAAGCTTATCAGTTCGTTTATGGTAGAGATCGAAATCACAATCGCCGTCGTGCTGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGATACAAATAAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.554

0.506
  cinA Streptococcus mitis SK321

48.804

100

0.492
  cinA Streptococcus pneumoniae TIGR4

48.333

100

0.489
  cinA Streptococcus mutans UA159

48.558

100

0.487
  cinA Streptococcus mitis NCTC 12261

48.21

100

0.487
  cinA Streptococcus pneumoniae Rx1

48.095

100

0.487
  cinA Streptococcus pneumoniae R6

48.095

100

0.487
  cinA Streptococcus pneumoniae D39

47.857

100

0.484
  cinA Streptococcus suis isolate S10

40.534

99.277

0.402

Multiple sequence alignment