Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACK2V6_RS12490 | Genome accession | NZ_CP176657 |
| Coordinates | 2721495..2721914 (+) | Length | 139 a.a. |
| NCBI ID | WP_005479693.1 | Uniprot ID | Q87LT8 |
| Organism | Vibrio parahaemolyticus strain GTVSS-032 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2716495..2726914
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK2V6_RS12475 (ACK2V6_12475) | pdhR | 2718528..2719295 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| ACK2V6_RS12480 (ACK2V6_12480) | ampD | 2719701..2720252 (-) | 552 | WP_005479703.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACK2V6_RS12485 (ACK2V6_12485) | nadC | 2720345..2721232 (+) | 888 | WP_005479699.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACK2V6_RS12490 (ACK2V6_12490) | pilA | 2721495..2721914 (+) | 420 | WP_005479693.1 | pilin | Machinery gene |
| ACK2V6_RS12495 (ACK2V6_12495) | pilB | 2721924..2723609 (+) | 1686 | WP_005479695.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACK2V6_RS12500 (ACK2V6_12500) | pilC | 2723633..2724856 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| ACK2V6_RS12505 (ACK2V6_12505) | pilD | 2724921..2725790 (+) | 870 | WP_005490359.1 | prepilin peptidase | Machinery gene |
| ACK2V6_RS12510 (ACK2V6_12510) | coaE | 2725791..2726405 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14180.19 Da Isoelectric Point: 4.4684
>NTDB_id=1082102 ACK2V6_RS12490 WP_005479693.1 2721495..2721914(+) (pilA) [Vibrio parahaemolyticus strain GTVSS-032]
MKHSKQKKQQGFTLIELMIVVAIIGVLAAAAIPAYQNYVTRSEVTSGLATVKALITPAELHYQENGIAAAATLAQLGVDV
AANDLGAIDSALAGGSPTLTFTFDADSSIDGGILTFTRDAATGWSCLPTAPAIAVDGCS
MKHSKQKKQQGFTLIELMIVVAIIGVLAAAAIPAYQNYVTRSEVTSGLATVKALITPAELHYQENGIAAAATLAQLGVDV
AANDLGAIDSALAGGSPTLTFTFDADSSIDGGILTFTRDAATGWSCLPTAPAIAVDGCS
Nucleotide
Download Length: 420 bp
>NTDB_id=1082102 ACK2V6_RS12490 WP_005479693.1 2721495..2721914(+) (pilA) [Vibrio parahaemolyticus strain GTVSS-032]
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTCACTCTGATTGAGTTAATGATTGTGGTAGCGATTATCGGCGTTTT
GGCTGCAGCTGCTATCCCTGCTTATCAAAATTATGTGACTCGCTCTGAAGTTACATCAGGGTTAGCAACCGTTAAAGCTC
TGATCACACCGGCTGAGCTGCATTACCAAGAAAATGGTATCGCGGCGGCTGCAACATTAGCCCAATTGGGAGTTGATGTT
GCAGCTAATGACTTAGGAGCTATTGATTCTGCCCTTGCAGGTGGTAGTCCAACTCTGACATTTACCTTCGATGCAGACAG
TTCTATCGACGGTGGGATACTAACGTTCACAAGAGACGCTGCAACTGGTTGGTCATGTTTACCTACTGCACCAGCAATTG
CAGTCGATGGTTGCAGTTAA
ATGAAACACAGTAAACAGAAAAAACAACAGGGTTTCACTCTGATTGAGTTAATGATTGTGGTAGCGATTATCGGCGTTTT
GGCTGCAGCTGCTATCCCTGCTTATCAAAATTATGTGACTCGCTCTGAAGTTACATCAGGGTTAGCAACCGTTAAAGCTC
TGATCACACCGGCTGAGCTGCATTACCAAGAAAATGGTATCGCGGCGGCTGCAACATTAGCCCAATTGGGAGTTGATGTT
GCAGCTAATGACTTAGGAGCTATTGATTCTGCCCTTGCAGGTGGTAGTCCAACTCTGACATTTACCTTCGATGCAGACAG
TTCTATCGACGGTGGGATACTAACGTTCACAAGAGACGCTGCAACTGGTTGGTCATGTTTACCTACTGCACCAGCAATTG
CAGTCGATGGTTGCAGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| pilA | Pseudomonas aeruginosa PAK |
48.507 |
96.403 |
0.468 |
| pilA | Vibrio cholerae strain A1552 |
41.892 |
100 |
0.446 |
| pilA | Vibrio cholerae C6706 |
41.892 |
100 |
0.446 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.892 |
100 |
0.446 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
35.862 |
100 |
0.374 |
| comF | Acinetobacter baylyi ADP1 |
36.691 |
100 |
0.367 |