Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACK2V6_RS12505 | Genome accession | NZ_CP176657 |
| Coordinates | 2724921..2725790 (+) | Length | 289 a.a. |
| NCBI ID | WP_005490359.1 | Uniprot ID | Q87LT5 |
| Organism | Vibrio parahaemolyticus strain GTVSS-032 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2719921..2730790
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK2V6_RS12485 (ACK2V6_12485) | nadC | 2720345..2721232 (+) | 888 | WP_005479699.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACK2V6_RS12490 (ACK2V6_12490) | pilA | 2721495..2721914 (+) | 420 | WP_005479693.1 | pilin | Machinery gene |
| ACK2V6_RS12495 (ACK2V6_12495) | pilB | 2721924..2723609 (+) | 1686 | WP_005479695.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACK2V6_RS12500 (ACK2V6_12500) | pilC | 2723633..2724856 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| ACK2V6_RS12505 (ACK2V6_12505) | pilD | 2724921..2725790 (+) | 870 | WP_005490359.1 | prepilin peptidase | Machinery gene |
| ACK2V6_RS12510 (ACK2V6_12510) | coaE | 2725791..2726405 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| ACK2V6_RS12515 (ACK2V6_12515) | zapD | 2726433..2727173 (+) | 741 | WP_005480890.1 | cell division protein ZapD | - |
| ACK2V6_RS12520 (ACK2V6_12520) | yacG | 2727242..2727436 (+) | 195 | WP_005462546.1 | DNA gyrase inhibitor YacG | - |
| ACK2V6_RS12525 (ACK2V6_12525) | rplS | 2727831..2728184 (-) | 354 | WP_005462554.1 | 50S ribosomal protein L19 | - |
| ACK2V6_RS12530 (ACK2V6_12530) | trmD | 2728226..2728969 (-) | 744 | WP_005462562.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACK2V6_RS12535 (ACK2V6_12535) | rimM | 2728997..2729545 (-) | 549 | WP_005462552.1 | ribosome maturation factor RimM | - |
| ACK2V6_RS12540 (ACK2V6_12540) | rpsP | 2729574..2729822 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32453.53 Da Isoelectric Point: 7.1971
>NTDB_id=1082105 ACK2V6_RS12505 WP_005490359.1 2724921..2725790(+) (pilD) [Vibrio parahaemolyticus strain GTVSS-032]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFFLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFFLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV
Nucleotide
Download Length: 870 bp
>NTDB_id=1082105 ACK2V6_RS12505 WP_005490359.1 2724921..2725790(+) (pilD) [Vibrio parahaemolyticus strain GTVSS-032]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTTTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTTTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
88.927 |
100 |
0.889 |
| pilD | Vibrio cholerae strain A1552 |
73.264 |
99.654 |
0.73 |
| pilD | Acinetobacter baumannii D1279779 |
52.239 |
92.734 |
0.484 |
| pilD | Acinetobacter nosocomialis M2 |
51.292 |
93.772 |
0.481 |
| pilD | Neisseria gonorrhoeae MS11 |
47.464 |
95.502 |
0.453 |