Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACK2V4_RS12000 | Genome accession | NZ_CP176646 |
| Coordinates | 2610651..2611088 (+) | Length | 145 a.a. |
| NCBI ID | WP_062854444.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain GTVSS-031 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2605651..2616088
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK2V4_RS11985 (ACK2V4_11985) | pdhR | 2607684..2608451 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| ACK2V4_RS11990 (ACK2V4_11990) | ampD | 2608857..2609408 (-) | 552 | WP_005484832.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACK2V4_RS11995 (ACK2V4_11995) | nadC | 2609501..2610388 (+) | 888 | WP_062854445.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACK2V4_RS12000 (ACK2V4_12000) | pilA | 2610651..2611088 (+) | 438 | WP_062854444.1 | type IV pilin protein | Machinery gene |
| ACK2V4_RS12005 (ACK2V4_12005) | pilB | 2611100..2612785 (+) | 1686 | WP_021822764.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACK2V4_RS12010 (ACK2V4_12010) | pilC | 2612809..2614032 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| ACK2V4_RS12015 (ACK2V4_12015) | pilD | 2614097..2614966 (+) | 870 | WP_062854443.1 | prepilin peptidase | Machinery gene |
| ACK2V4_RS12020 (ACK2V4_12020) | coaE | 2614967..2615581 (+) | 615 | WP_062854442.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 14926.11 Da Isoelectric Point: 9.7436
>NTDB_id=1081916 ACK2V4_RS12000 WP_062854444.1 2610651..2611088(+) (pilA) [Vibrio parahaemolyticus strain GTVSS-031]
MKQSKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRINVETYVVENGSFPTTAQLPVPTSP
LGVVSYTASASGAGASSGAIKFTFKSTGVSPDVISKDVTLERDGTGQWSCSSGITATGVKPKACS
MKQSKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRINVETYVVENGSFPTTAQLPVPTSP
LGVVSYTASASGAGASSGAIKFTFKSTGVSPDVISKDVTLERDGTGQWSCSSGITATGVKPKACS
Nucleotide
Download Length: 438 bp
>NTDB_id=1081916 ACK2V4_RS12000 WP_062854444.1 2610651..2611088(+) (pilA) [Vibrio parahaemolyticus strain GTVSS-031]
ATGAAACAGAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAACTGATGATTGTGGTAGCGGTAATTGGTGTTTT
AGCTGCAATTGCAGTTCCACAATACCAAAAATATGTAGCTAAAAGTGAGGCAGCGTCTGCACTAGCCTCCATCACTGGGC
ATAGAATAAATGTTGAGACTTATGTTGTTGAAAATGGCTCATTTCCAACAACGGCCCAGCTGCCAGTTCCGACTTCTCCA
CTTGGTGTAGTTAGCTATACAGCTTCAGCTTCAGGAGCGGGTGCATCGTCAGGTGCAATAAAATTCACATTTAAAAGCAC
AGGTGTAAGTCCAGACGTTATAAGTAAGGACGTGACTCTAGAGCGTGATGGAACAGGTCAATGGAGCTGTTCCTCTGGTA
TTACTGCTACAGGTGTAAAACCTAAAGCATGTTCTTAA
ATGAAACAGAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAACTGATGATTGTGGTAGCGGTAATTGGTGTTTT
AGCTGCAATTGCAGTTCCACAATACCAAAAATATGTAGCTAAAAGTGAGGCAGCGTCTGCACTAGCCTCCATCACTGGGC
ATAGAATAAATGTTGAGACTTATGTTGTTGAAAATGGCTCATTTCCAACAACGGCCCAGCTGCCAGTTCCGACTTCTCCA
CTTGGTGTAGTTAGCTATACAGCTTCAGCTTCAGGAGCGGGTGCATCGTCAGGTGCAATAAAATTCACATTTAAAAGCAC
AGGTGTAAGTCCAGACGTTATAAGTAAGGACGTGACTCTAGAGCGTGATGGAACAGGTCAATGGAGCTGTTCCTCTGGTA
TTACTGCTACAGGTGTAAAACCTAAAGCATGTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
47.368 |
100 |
0.497 |
| pilA | Vibrio cholerae strain A1552 |
47.368 |
100 |
0.497 |
| pilA | Vibrio cholerae C6706 |
47.368 |
100 |
0.497 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.953 |
100 |
0.441 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.466 |
100 |
0.428 |
| pilA | Pseudomonas aeruginosa PAK |
40.789 |
100 |
0.428 |
| pilA | Acinetobacter baumannii strain A118 |
42.336 |
94.483 |
0.4 |