Detailed information NTG1081919

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACK2V4_RS12015
• Genome accession: NZ_CP176646
• Coordinates: 2614097..2614966 (+)
• Length: 289 a.a.
• NCBI ID: WP_062854443.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain GTVSS-031
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2609097..2619966

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK2V4_RS11995 (ACK2V4_11995)	nadC	2609501..2610388 (+)	888	WP_062854445.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACK2V4_RS12000 (ACK2V4_12000)	pilA	2610651..2611088 (+)	438	WP_062854444.1	type IV pilin protein	Machinery gene
ACK2V4_RS12005 (ACK2V4_12005)	pilB	2611100..2612785 (+)	1686	WP_021822764.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACK2V4_RS12010 (ACK2V4_12010)	pilC	2612809..2614032 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
ACK2V4_RS12015 (ACK2V4_12015)	pilD	2614097..2614966 (+)	870	WP_062854443.1	prepilin peptidase	Machinery gene
ACK2V4_RS12020 (ACK2V4_12020)	coaE	2614967..2615581 (+)	615	WP_062854442.1	dephospho-CoA kinase	-
ACK2V4_RS12025 (ACK2V4_12025)	zapD	2615609..2616349 (+)	741	WP_015297254.1	cell division protein ZapD	-
ACK2V4_RS12030 (ACK2V4_12030)	yacG	2616418..2616612 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
ACK2V4_RS12035 (ACK2V4_12035)	rplS	2617007..2617360 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
ACK2V4_RS12040 (ACK2V4_12040)	trmD	2617402..2618145 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACK2V4_RS12045 (ACK2V4_12045)	rimM	2618173..2618721 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
ACK2V4_RS12050 (ACK2V4_12050)	rpsP	2618750..2618998 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32407.50 Da
• Isoelectric Point: 7.1970

>NTDB_id=1081919 ACK2V4_RS12015 WP_062854443.1 2614097..2614966(+) (pilD) [Vibrio parahaemolyticus strain GTVSS-031]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAITGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1081919 ACK2V4_RS12015 WP_062854443.1 2614097..2614966(+) (pilD) [Vibrio parahaemolyticus strain GTVSS-031]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTAC
CGGTTATTTATGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443