Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACK2WG_RS09050 Genome accession   NZ_CP176536
Coordinates   1751237..1752487 (+) Length   416 a.a.
NCBI ID   WP_409509703.1    Uniprot ID   -
Organism   Bacillus spizizenii strain 29-4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1746237..1757487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WG_RS09020 (ACK2WG_09020) yfmH 1746328..1747614 (+) 1287 WP_014113833.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACK2WG_RS09025 (ACK2WG_09025) ymfI 1747668..1748396 (+) 729 WP_409509702.1 elongation factor P 5-aminopentanone reductase -
  ACK2WG_RS09030 (ACK2WG_09030) - 1748477..1748734 (+) 258 WP_003220996.1 DUF3243 domain-containing protein -
  ACK2WG_RS09035 (ACK2WG_09035) - 1748864..1749655 (+) 792 WP_003220998.1 DUF3388 domain-containing protein -
  ACK2WG_RS09040 (ACK2WG_09040) rodZ 1749722..1750588 (+) 867 WP_268393948.1 cell shape determination protein RodZ -
  ACK2WG_RS09045 (ACK2WG_09045) pgsA 1750638..1751219 (+) 582 WP_014113836.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACK2WG_RS09050 (ACK2WG_09050) cinA 1751237..1752487 (+) 1251 WP_409509703.1 competence/damage-inducible protein A Machinery gene
  ACK2WG_RS09055 (ACK2WG_09055) recA 1752660..1753706 (+) 1047 WP_014113838.1 recombinase RecA Machinery gene
  ACK2WG_RS09060 (ACK2WG_09060) - 1753874..1755049 (+) 1176 WP_409509704.1 serine hydrolase domain-containing protein -
  ACK2WG_RS09065 (ACK2WG_09065) rny 1755325..1756887 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45603.96 Da        Isoelectric Point: 5.3834

>NTDB_id=1080776 ACK2WG_RS09050 WP_409509703.1 1751237..1752487(+) (cinA) [Bacillus spizizenii strain 29-4]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANALGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTILRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKSITISAAESFTGGLFSEWLTDLSGASKRFAGGVVCYTNDMKQNVLG
VKKETLDQFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1080776 ACK2WG_RS09050 WP_409509703.1 1751237..1752487(+) (cinA) [Bacillus spizizenii strain 29-4]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGCTATTGCTTGGCCAGATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATTGGAGTGAACGTATTTTATCATACAGCAGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGTCTCGGACCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATGCGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGGACGATGTCACCTAATAATCGAAAACAGGCGCTTGTAATCGAAGGATCTGACGTACTGGCAAATC
ACTTTGGAATGGCACCGGGAATGCTCACAGAACATGAATCGCGCTTTTATATGCTTCTTCCTGGACCGCCAAGCGAATTG
CGTCCCATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTATCAACCATTCT
TCGCTTTTTCGGTATTGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAACCCGACAATCG
CTCCTTTGGCGGCAGATGGAGAGGTGACGCTGCGTCTGACAGCCAAGCATGCTGACGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCTGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCCCTTGTAAAAGAGCT
TTCTAAAGCATGTAAGGAAAAAAGCATTACGATTTCCGCGGCGGAAAGTTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAAAACGATTTGCCGGCGGCGTCGTTTGCTATACAAACGACATGAAACAGAATGTGCTTGGC
GTCAAGAAGGAAACATTAGATCAATTTGGCGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACTGGTAGCGACATCGGCATCAGCTTTACCGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGACATGTGT
TTATCGGTATTTCAGCTAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGC
GGTGCCAAATACGGCTGCCATTTAATCTTGAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

97.596

100

0.976
  cinA Streptococcus mitis SK321

45.215

100

0.454
  cinA Streptococcus mitis NCTC 12261

45.215

100

0.454
  cinA Streptococcus mutans UA159

45.521

99.279

0.452
  cinA Streptococcus pneumoniae TIGR4

44.976

100

0.452
  cinA Streptococcus pneumoniae Rx1

44.737

100

0.45
  cinA Streptococcus pneumoniae R6

44.737

100

0.45
  cinA Streptococcus pneumoniae D39

44.498

100

0.447
  cinA Streptococcus suis isolate S10

41.114

90.625

0.373

Multiple sequence alignment