Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACK1O1_RS15670 Genome accession   NZ_CP176505
Coordinates   3438710..3439969 (+) Length   419 a.a.
NCBI ID   WP_309334227.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain PSKL1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3433710..3444969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1O1_RS15655 (ACK1O1_15655) pilB 3435046..3436773 (-) 1728 WP_409460401.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACK1O1_RS15660 (ACK1O1_15660) - 3436900..3437805 (-) 906 WP_409460402.1 sterol desaturase family protein -
  ACK1O1_RS15665 (ACK1O1_15665) - 3437908..3438348 (-) 441 WP_057498795.1 pilin -
  ACK1O1_RS15670 (ACK1O1_15670) pilC 3438710..3439969 (+) 1260 WP_309334227.1 type II secretion system F family protein Machinery gene
  ACK1O1_RS15675 (ACK1O1_15675) - 3439978..3440841 (+) 864 WP_107231736.1 prepilin peptidase -
  ACK1O1_RS15680 (ACK1O1_15680) coaE 3440853..3441464 (+) 612 WP_409460403.1 dephospho-CoA kinase -
  ACK1O1_RS15685 (ACK1O1_15685) - 3441560..3441976 (-) 417 WP_409460404.1 hypothetical protein -
  ACK1O1_RS15690 (ACK1O1_15690) - 3442243..3443610 (-) 1368 WP_409460405.1 sensor histidine kinase -
  ACK1O1_RS15695 (ACK1O1_15695) - 3443573..3444250 (-) 678 WP_005410804.1 response regulator transcription factor -
  ACK1O1_RS15700 (ACK1O1_15700) - 3444410..3444871 (-) 462 WP_107231725.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45817.25 Da        Isoelectric Point: 10.1703

>NTDB_id=1080506 ACK1O1_RS15670 WP_309334227.1 3438710..3439969(+) (pilC) [Stenotrophomonas maltophilia strain PSKL1]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGIKMKGEQLAKNANLLRAELRKQGINPGQVKPKPKPLFGAAGKPVTAKD
VAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDGIRADIEGGSSLYEAISRHPVQFDELYRNLVRAGESAGVLE
TVLDTIASYKENIEALKGKIKKALFYPAMVLVVAFLVSTVLLVWVVPQFEEVFKNFGADLPAFTQMVVNLSRFMVSWWWL
IAIVVIGAVVAIAMTYRRSEKMQHTVDRLVLKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYGD
AVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGLVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1080506 ACK1O1_RS15670 WP_309334227.1 3438710..3439969(+) (pilC) [Stenotrophomonas maltophilia strain PSKL1]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCCCGTGCCACGATGGAGCTGCAACCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCATCAAGATGAAGGGCGAGCAGTTGGCCAAGAACGCCAACCTGCTGCGTGCCGAACTGCGCAAGC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGTTGTTCGGGGCCGCCGGCAAGCCGGTCACCGCCAAGGAC
GTTGCCTTCTTCAGCCGGCAGATGGCCACCATGATGAAGTCCGGCGTGCCGATCGTCTCGGCACTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACGGCATCCGCGCCGACATCGAGGGCGGTTCCTCGCTGTACGAGG
CCATCAGCCGGCATCCGGTGCAGTTCGACGAGCTCTACCGCAACCTGGTCCGCGCCGGCGAGAGCGCCGGTGTGCTGGAA
ACCGTGCTGGACACGATCGCCTCCTACAAGGAGAACATCGAGGCACTGAAGGGCAAGATCAAGAAGGCCCTGTTCTACCC
GGCCATGGTGCTGGTGGTGGCATTCCTGGTCAGCACCGTGCTGCTGGTGTGGGTGGTGCCGCAGTTCGAGGAGGTCTTCA
AGAACTTCGGCGCCGACCTGCCGGCCTTCACCCAGATGGTGGTGAACCTGTCGCGGTTCATGGTGTCCTGGTGGTGGCTG
ATCGCCATTGTGGTGATCGGTGCGGTGGTGGCCATTGCCATGACCTACCGGCGCTCGGAGAAGATGCAGCACACCGTCGA
CCGGCTGGTGCTGAAGGTGCCGGTGATCGGCCAGATCATGCACAACAGCGCCATCGCCCGCTTCGCCCGCACCACGGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACCGGCAACAAGGTCTATGGCGAC
GCCGTGCTGCGCATGCGCGACGACGTGTCGGTCGGCTACCCGGTCAACATGGCCATGAAGCAGCTGAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGTGAAGAGGCCGGCGCCCTGGATGCCATGCTGTTCAAGGTGGCTGAATACTACG
AGCAGGAAGTGAACAATGCCGTGGATGCCTTGAGCAGCCTGCTCGAACCGATGATCATGGTGTTCATTGGTACCATTGTC
GGTGGCTTGGTCATCGCGATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.632

95.227

0.501
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.511

0.501
  pilC Acinetobacter baumannii D1279779

50.123

97.136

0.487
  pilC Acinetobacter baylyi ADP1

50.246

96.897

0.487
  pilG Neisseria gonorrhoeae MS11

43.577

94.749

0.413
  pilG Neisseria meningitidis 44/76-A

43.325

94.749

0.411
  pilC Vibrio cholerae strain A1552

40.64

96.897

0.394
  pilC Vibrio campbellii strain DS40M4

40.648

95.704

0.389

Multiple sequence alignment