Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACJ7VY_RS12430 Genome accession   NZ_CP176501
Coordinates   2736890..2738149 (+) Length   419 a.a.
NCBI ID   WP_409475733.1    Uniprot ID   -
Organism   Stenotrophomonas sp. Y-13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2724992..2736067 2736890..2738149 flank 823


Gene organization within MGE regions


Location: 2724992..2738149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ7VY_RS12370 (ACJ7VY_12370) - 2724992..2725303 (+) 312 WP_313247651.1 CcdB family protein -
  ACJ7VY_RS12375 (ACJ7VY_12375) - 2725398..2726096 (+) 699 WP_409475722.1 hypothetical protein -
  ACJ7VY_RS12380 (ACJ7VY_12380) galE 2726118..2727092 (-) 975 WP_409475723.1 UDP-glucose 4-epimerase GalE -
  ACJ7VY_RS12385 (ACJ7VY_12385) - 2727231..2728088 (+) 858 WP_409475724.1 glycosyltransferase family 2 protein -
  ACJ7VY_RS12390 (ACJ7VY_12390) - 2728124..2728921 (+) 798 WP_409475725.1 class I SAM-dependent methyltransferase -
  ACJ7VY_RS12395 (ACJ7VY_12395) - 2728945..2729859 (+) 915 WP_409475726.1 lysylphosphatidylglycerol synthase domain-containing protein -
  ACJ7VY_RS12400 (ACJ7VY_12400) - 2729856..2730704 (+) 849 WP_409475727.1 class I SAM-dependent methyltransferase -
  ACJ7VY_RS12405 (ACJ7VY_12405) - 2730697..2731869 (+) 1173 WP_409475728.1 glycosyltransferase -
  ACJ7VY_RS12410 (ACJ7VY_12410) - 2731993..2733384 (-) 1392 WP_409475729.1 sulfatase-like hydrolase/transferase -
  ACJ7VY_RS12415 (ACJ7VY_12415) - 2733804..2734166 (-) 363 WP_409475730.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACJ7VY_RS12420 (ACJ7VY_12420) - 2734235..2736073 (-) 1839 WP_409475731.1 hypothetical protein -
  ACJ7VY_RS12425 (ACJ7VY_12425) - 2736152..2736523 (-) 372 WP_409475732.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACJ7VY_RS12430 (ACJ7VY_12430) pilC 2736890..2738149 (+) 1260 WP_409475733.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45820.00 Da        Isoelectric Point: 10.1077

>NTDB_id=1080481 ACJ7VY_RS12430 WP_409475733.1 2736890..2738149(+) (pilC) [Stenotrophomonas sp. Y-13]
MSATRSAVNKTPVDRNTSQMQPFVWEGTDKRGARMKGEQDARNANMLRAELRRQGITPTVVKPKPKPLFGASGKPIKPKD
IAFFSRQMATMMKSGVPIVTSLEIIGSGHKNPRMAKLVGQIRADLEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLETIANYQENIESLKGKIKKALFYPAMTIAVALLVSAILLVFVVPQFEEVFSSFGADLPLFTQMIVAASRFLVGWWWL
ILLVTVGAIVGFIFALKRSSRMQHTMDRLVLKVPVIGQIMHNSAIARFSRTTGVTFRAGVPLVEALGIVAGATGNKVYEE
AVLHMRDDVAVGYPVNMAMKQVNVFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLIEPMIMVFIGVIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1080481 ACJ7VY_RS12430 WP_409475733.1 2736890..2738149(+) (pilC) [Stenotrophomonas sp. Y-13]
ATGTCGGCTACCCGTAGCGCAGTGAACAAGACGCCGGTGGATCGCAACACCAGCCAGATGCAACCGTTTGTCTGGGAGGG
GACGGACAAACGCGGGGCCAGGATGAAGGGCGAGCAGGACGCCCGCAACGCCAACATGCTGCGCGCAGAACTGCGCAGGC
AGGGCATCACCCCCACAGTGGTGAAGCCCAAGCCCAAACCCCTGTTCGGCGCGTCCGGCAAGCCCATCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGCCAGATGGCGACGATGATGAAGTCCGGCGTACCCATCGTCACCTCGCTGGAGATCATCGGCAG
CGGCCACAAGAACCCGCGCATGGCCAAGCTGGTCGGGCAGATCCGCGCCGACCTGGAAGGCGGCTCTTCCCTGTACGAGG
CCATCAGCAAGCATCCGGTGCAGTTCGACGAGCTTTACCGCAATCTGGTACGCGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGAGACCATCGCCAACTACCAGGAAAACATCGAGTCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCGATGACCATTGCCGTGGCGCTGCTGGTCAGTGCGATCCTGCTGGTCTTCGTCGTGCCGCAGTTCGAGGAAGTGTTCA
GCAGCTTCGGTGCCGACCTGCCGCTATTCACGCAGATGATCGTGGCCGCCTCGCGCTTCTTGGTCGGCTGGTGGTGGCTG
ATATTGCTGGTAACCGTGGGCGCCATCGTGGGCTTCATTTTTGCCCTCAAACGCTCGTCCAGGATGCAGCACACCATGGA
CCGGCTGGTCCTCAAGGTGCCGGTGATCGGCCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCCCGTACGACGGGCG
TGACCTTCCGGGCCGGCGTCCCGCTGGTCGAGGCGCTGGGCATCGTCGCCGGCGCCACCGGCAACAAGGTCTATGAGGAA
GCCGTCCTGCACATGCGCGACGACGTGGCGGTGGGCTACCCGGTGAACATGGCGATGAAGCAGGTCAACGTGTTCCCGCA
CATGGTGATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGACACCATGCTGTTCAAGGTGGCCGAGTATTTCG
AGCAGGAAGTGAACAACGCCGTGGATGCCTTGAGCAGCCTGATTGAACCGATGATCATGGTGTTCATCGGCGTCATCGTT
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTCGCCTCCGTAGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.02

94.511

0.492
  pilC Acinetobacter baylyi ADP1

50.123

96.659

0.484
  pilC Legionella pneumophila strain ERS1305867

49.507

96.897

0.48
  pilC Acinetobacter baumannii D1279779

48.883

96.181

0.47
  pilG Neisseria gonorrhoeae MS11

41.75

95.465

0.399
  pilG Neisseria meningitidis 44/76-A

40.898

95.704

0.391
  pilC Vibrio campbellii strain DS40M4

39.651

95.704

0.379
  pilC Vibrio cholerae strain A1552

39.356

96.42

0.379
  pilC Thermus thermophilus HB27

37.905

95.704

0.363

Multiple sequence alignment