Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACK0E5_RS04150 Genome accession   NZ_CP176476
Coordinates   870546..871787 (+) Length   413 a.a.
NCBI ID   WP_003578250.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain BBM396     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 865546..876787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK0E5_RS04130 yfmH 866478..867770 (+) 1293 WP_218209984.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACK0E5_RS04135 ymfI 867770..868498 (+) 729 WP_003569514.1 elongation factor P 5-aminopentanone reductase -
  ACK0E5_RS04140 - 868585..869514 (+) 930 WP_003569516.1 helix-turn-helix domain-containing protein -
  ACK0E5_RS04145 pgsA 869511..870104 (+) 594 WP_003564171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACK0E5_RS04150 cinA 870546..871787 (+) 1242 WP_003578250.1 competence/damage-inducible protein A Machinery gene
  ACK0E5_RS04155 recA 871844..872905 (+) 1062 WP_003587498.1 recombinase RecA Machinery gene
  ACK0E5_RS04160 rny 873200..874771 (+) 1572 WP_003657913.1 ribonuclease Y -
  ACK0E5_RS04165 - 874865..875515 (-) 651 WP_003657915.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44270.58 Da        Isoelectric Point: 6.0028

>NTDB_id=1080340 ACK0E5_RS04150 WP_003578250.1 870546..871787(+) (cinA) [Lacticaseibacillus paracasei strain BBM396]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTALGIDSYHQQVVGDNGPRLEEAIKLAESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPDAMAKLQARAKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNGQHTYVLLPGPPKEFVPMV
DHELLPRLAKWSGHAEVMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGATEKDADAKLEPMV
GAIMDRDGQYFYGYGDDNSLAKELVKTLAANDMQITAAESLTAGAFQAALGDVPGVSTYFKGGFVTYSLATKAAFLAIDA
RELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTVWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1080340 ACK0E5_RS04150 WP_003578250.1 870546..871787(+) (cinA) [Lacticaseibacillus paracasei strain BBM396]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCACTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGTCCGCGACTTGAGGAGGCCATTA
AGTTGGCGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGACGCTATGGCTAAATTACAGGCGCGCGCCAAGCAACAGCA
GCGGCCAATGACACCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGCTTAG
CGGTTGGTGCGTGGATCGTCAATGGGCAGCACACCTATGTCTTATTGCCGGGACCACCCAAGGAATTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCGGCTAGCAAAATGGAGCGGCCACGCGGAAGTTATGGTCAGCCGGGTCTTACGTTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTACCGAAAAAGACGCTGATGCAAAGTTAGAACCAATGGTC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGCTTGTGAAGAC
GCTTGCGGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCCGGCGCATTTCAAGCAGCGTTAGGCGATGTGC
CGGGGGTATCCACTTATTTTAAGGGCGGTTTTGTCACTTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
CGCGAATTAGCGGCACACGGAGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGGTTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGCGGTCGCAATGATGTTCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

51.651

100

0.53
  cinA Streptococcus mitis SK321

51.537

100

0.528
  cinA Streptococcus pneumoniae TIGR4

51.415

100

0.528
  cinA Streptococcus mutans UA159

52.174

100

0.523
  cinA Streptococcus pneumoniae Rx1

50.948

100

0.521
  cinA Streptococcus pneumoniae R6

50.948

100

0.521
  cinA Streptococcus pneumoniae D39

50.711

100

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

45.012

99.516

0.448
  cinA Streptococcus suis isolate S10

42.328

91.525

0.387

Multiple sequence alignment