Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACJ3Y0_RS03910 | Genome accession | NZ_CP176471 |
| Coordinates | 875835..876134 (-) | Length | 99 a.a. |
| NCBI ID | WP_372384528.1 | Uniprot ID | - |
| Organism | Vibrio sp. BS-M-Sm-2 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 870835..881134
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ3Y0_RS03885 (ACJ3Y0_03885) | - | 871273..872508 (+) | 1236 | WP_285953328.1 | pyridoxal phosphate-dependent aminotransferase | - |
| ACJ3Y0_RS03890 (ACJ3Y0_03890) | yfbR | 872677..873261 (+) | 585 | WP_285953329.1 | 5'-deoxynucleotidase | - |
| ACJ3Y0_RS03895 (ACJ3Y0_03895) | - | 873317..874660 (+) | 1344 | WP_372384526.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACJ3Y0_RS03900 (ACJ3Y0_03900) | - | 874687..875286 (-) | 600 | WP_372384527.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACJ3Y0_RS03905 (ACJ3Y0_03905) | rrtA | 875296..875844 (+) | 549 | WP_146491717.1 | rhombosortase | - |
| ACJ3Y0_RS03910 (ACJ3Y0_03910) | comEA | 875835..876134 (-) | 300 | WP_372384528.1 | ComEA family DNA-binding protein | Machinery gene |
| ACJ3Y0_RS03915 (ACJ3Y0_03915) | ppiD | 876398..878263 (-) | 1866 | WP_372384529.1 | peptidylprolyl isomerase | - |
| ACJ3Y0_RS03920 (ACJ3Y0_03920) | - | 878483..878755 (-) | 273 | WP_004736083.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10748.34 Da Isoelectric Point: 4.5702
>NTDB_id=1080231 ACJ3Y0_RS03910 WP_372384528.1 875835..876134(-) (comEA) [Vibrio sp. BS-M-Sm-2]
MRTIYSTLLLSFLMLLSPAVFADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVVYREQNGAFTTADDLA
SVKGIGEATVKKNRERIQL
MRTIYSTLLLSFLMLLSPAVFADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVVYREQNGAFTTADDLA
SVKGIGEATVKKNRERIQL
Nucleotide
Download Length: 300 bp
>NTDB_id=1080231 ACJ3Y0_RS03910 WP_372384528.1 875835..876134(-) (comEA) [Vibrio sp. BS-M-Sm-2]
ATGCGCACGATATACTCAACATTACTTCTTTCATTTCTGATGCTTTTAAGCCCTGCCGTGTTTGCAGACAGCCCAACCAA
GGCTGAGCTTTACGATGGCATTGAGATTACGGTTAACATCAACACAGCGACAGCAGAGGAGCTATCAGCACTACTGGTTG
GTGTGGGTGACAAAAAAGCCCAAGAGATTGTCGTCTATAGAGAGCAGAACGGTGCGTTTACAACTGCTGATGACTTGGCG
AGTGTGAAAGGGATAGGTGAAGCGACAGTTAAAAAGAACCGCGAAAGAATTCAACTTTGA
ATGCGCACGATATACTCAACATTACTTCTTTCATTTCTGATGCTTTTAAGCCCTGCCGTGTTTGCAGACAGCCCAACCAA
GGCTGAGCTTTACGATGGCATTGAGATTACGGTTAACATCAACACAGCGACAGCAGAGGAGCTATCAGCACTACTGGTTG
GTGTGGGTGACAAAAAAGCCCAAGAGATTGTCGTCTATAGAGAGCAGAACGGTGCGTTTACAACTGCTGATGACTTGGCG
AGTGTGAAAGGGATAGGTGAAGCGACAGTTAAAAAGAACCGCGAAAGAATTCAACTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
56.701 |
97.98 |
0.556 |
| comEA | Vibrio cholerae strain A1552 |
56.701 |
97.98 |
0.556 |
| comEA | Vibrio campbellii strain DS40M4 |
57.609 |
92.929 |
0.535 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
56.383 |
94.949 |
0.535 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
36.937 |
100 |
0.414 |
| comEA | Acinetobacter baumannii strain A118 |
31.538 |
100 |
0.414 |
| comEA | Acinetobacter baylyi ADP1 |
47.561 |
82.828 |
0.394 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
60 |
60.606 |
0.364 |