Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACKN8R_RS01940 Genome accession   NZ_CP176031
Coordinates   402583..403695 (+) Length   370 a.a.
NCBI ID   WP_193282542.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain L2171     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 397583..408695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKN8R_RS01920 (ACKN8R_01920) rsmB 398503..399786 (-) 1284 WP_193282540.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACKN8R_RS01925 (ACKN8R_01925) fmt 399867..400814 (-) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  ACKN8R_RS01930 (ACKN8R_01930) def 400848..401366 (-) 519 WP_005461416.1 peptide deformylase -
  ACKN8R_RS01935 (ACKN8R_01935) - 401505..402599 (+) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  ACKN8R_RS01940 (ACKN8R_01940) dprA 402583..403695 (+) 1113 WP_193282542.1 DNA-processing protein DprA Machinery gene
  ACKN8R_RS01945 (ACKN8R_01945) - 403698..404177 (+) 480 WP_005461440.1 DUF494 family protein -
  ACKN8R_RS01950 (ACKN8R_01950) - 404256..404825 (+) 570 WP_021449061.1 type I DNA topoisomerase -
  ACKN8R_RS01955 (ACKN8R_01955) - 404895..406022 (-) 1128 WP_031821388.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACKN8R_RS01960 (ACKN8R_01960) purE 406027..406512 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACKN8R_RS01965 (ACKN8R_01965) - 406712..407269 (+) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  ACKN8R_RS01970 (ACKN8R_01970) hemF 407317..408234 (+) 918 WP_020904437.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39925.62 Da        Isoelectric Point: 6.4136

>NTDB_id=1079395 ACKN8R_RS01940 WP_193282542.1 402583..403695(+) (dprA) [Vibrio parahaemolyticus strain L2171]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLTWLAISTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQLQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNEEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1079395 ACKN8R_RS01940 WP_193282542.1 402583..403695(+) (dprA) [Vibrio parahaemolyticus strain L2171]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTTTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCATTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACTACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGAGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGAGGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-363)

DNA recombination-mediator protein A (DNA_processg_A)

(79-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Haemophilus influenzae Rd KW20

45.294

91.892

0.416
  dprA Legionella pneumophila strain ERS1305867

47.239

88.108

0.416
  dprA Neisseria meningitidis strain C311

36.923

100

0.389
  dprA Neisseria meningitidis MC58

36.923

100

0.389
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373

Multiple sequence alignment