Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACKE5C_RS06955 Genome accession   NZ_CP175539
Coordinates   1285594..1286835 (+) Length   413 a.a.
NCBI ID   WP_057899239.1    Uniprot ID   -
Organism   Aneurinibacillus thermoaerophilus strain AFn2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1280594..1291835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKE5C_RS06930 (ACKE5C_06930) - 1281424..1281678 (+) 255 WP_057899244.1 DUF3243 domain-containing protein -
  ACKE5C_RS06935 (ACKE5C_06935) - 1281840..1282640 (+) 801 WP_057899243.1 DUF3388 domain-containing protein -
  ACKE5C_RS06940 (ACKE5C_06940) - 1282672..1283520 (+) 849 WP_091260527.1 RodZ domain-containing protein -
  ACKE5C_RS06945 (ACKE5C_06945) rimO 1283702..1284964 (+) 1263 WP_236782027.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACKE5C_RS06950 (ACKE5C_06950) pgsA 1284965..1285543 (+) 579 WP_057899240.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACKE5C_RS06955 (ACKE5C_06955) cinA 1285594..1286835 (+) 1242 WP_057899239.1 competence/damage-inducible protein A Machinery gene
  ACKE5C_RS06960 (ACKE5C_06960) - 1286839..1288419 (+) 1581 WP_091260525.1 DEAD/DEAH box helicase -
  ACKE5C_RS06965 (ACKE5C_06965) bioA 1288537..1289895 (-) 1359 WP_057900362.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  ACKE5C_RS06970 (ACKE5C_06970) bioD 1289937..1290716 (-) 780 WP_091260523.1 dethiobiotin synthase -
  ACKE5C_RS06975 (ACKE5C_06975) - 1290698..1291285 (-) 588 WP_057899236.1 biotin transporter BioY -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44561.25 Da        Isoelectric Point: 6.9403

>NTDB_id=1077983 ACKE5C_RS06955 WP_057899239.1 1285594..1286835(+) (cinA) [Aneurinibacillus thermoaerophilus strain AFn2]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGIGVYYHTVVGDNADRLYVQIQEALNRSDLLIFSGGLGPTKDDLTKET
VARAVGKPLVHDEQALARIIAYFKQRGMTMTENNRKQALVVEGSHVLPNDHGMAPGMVIEHKGKHLMMLPGPPRELHPMF
NTYGIPYLLSLMGGKNVVHSKVLRFFGIGESALEEELIDLIDSQTNPTIAPLAAEGEVTIRLTAKAKSVVEAETMIRSVE
EQIEARVGQFIYGYDDDSLASVLVRELSVRGETVAFAESVTGGLASHLLTSIPGSSAALKGSIICYTNEVKEKQLGVPRD
VLQTTGAVSGDAARIMAEQVRLRIGSTYGIAITGEAGPHASEKSIGLVYIGASDGKHTNVRELRLSGQRAAIQLRAAKHA
IFTMLERIKKGGF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1077983 ACKE5C_RS06955 WP_057899239.1 1285594..1286835(+) (cinA) [Aneurinibacillus thermoaerophilus strain AFn2]
ATGAGAGCAGAAATTATTGCGGTCGGAACGGAGTTATTGCTTGGGCAAATCGCCAATACAAACGCCCAGTTCCTCTCGCA
AAAGTTAGCGGAAATTGGAATCGGTGTCTATTACCATACTGTCGTCGGCGACAATGCTGATCGGCTGTACGTACAGATTC
AAGAAGCGCTCAACCGTTCGGATTTGCTTATTTTTTCTGGAGGATTAGGGCCTACCAAAGATGACCTGACAAAAGAGACA
GTTGCCAGAGCTGTCGGGAAGCCATTGGTGCATGACGAACAGGCGCTTGCGCGCATTATCGCTTACTTTAAACAGCGCGG
CATGACGATGACGGAGAACAACCGTAAGCAGGCGCTTGTGGTGGAAGGAAGCCATGTATTGCCGAACGACCATGGCATGG
CACCGGGGATGGTTATTGAACATAAAGGTAAACATCTCATGATGCTACCAGGGCCTCCGCGTGAATTGCATCCGATGTTT
AACACGTATGGAATCCCCTACCTTTTGTCACTGATGGGTGGCAAAAACGTGGTGCACTCCAAAGTGCTTCGTTTTTTCGG
TATTGGTGAGTCGGCCCTTGAAGAAGAGTTGATAGATTTAATTGATTCTCAAACGAATCCGACGATTGCGCCGCTTGCGG
CTGAAGGGGAAGTCACGATTCGCTTGACCGCTAAAGCCAAAAGTGTGGTGGAAGCAGAGACGATGATCCGTTCCGTTGAA
GAACAAATCGAAGCGCGCGTCGGACAATTTATTTATGGATATGACGATGATTCGCTCGCTTCGGTGCTGGTGCGTGAGTT
AAGCGTACGTGGTGAAACGGTGGCATTTGCGGAGAGTGTGACAGGAGGTTTGGCGAGTCATTTACTCACTTCTATTCCGG
GCAGTTCGGCCGCGCTGAAAGGTTCTATCATTTGCTATACAAATGAAGTAAAGGAAAAGCAACTAGGCGTGCCGCGGGAT
GTGCTTCAGACCACGGGAGCGGTGAGTGGCGACGCAGCGCGTATTATGGCGGAGCAAGTGCGTCTTAGAATCGGAAGTAC
ATATGGAATTGCGATTACAGGAGAAGCTGGCCCACACGCGTCGGAGAAGTCTATAGGTCTCGTCTATATTGGCGCAAGCG
ATGGAAAACATACGAATGTCAGGGAACTTCGCCTATCCGGTCAGCGTGCCGCAATCCAGCTTCGTGCGGCAAAACATGCA
ATATTTACAATGCTTGAACGAATAAAAAAAGGTGGTTTTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-406)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.545
  cinA Streptococcus mitis NCTC 12261

46.602

99.758

0.465
  cinA Streptococcus mitis SK321

46.602

99.758

0.465
  cinA Streptococcus pneumoniae TIGR4

46.117

99.758

0.46
  cinA Streptococcus pneumoniae Rx1

45.631

99.758

0.455
  cinA Streptococcus pneumoniae R6

45.631

99.758

0.455
  cinA Streptococcus pneumoniae D39

45.388

99.758

0.453
  cinA Streptococcus mutans UA159

44.226

98.547

0.436
  cinA Streptococcus suis isolate S10

40.306

94.915

0.383

Multiple sequence alignment