Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACJED4_RS05445 Genome accession   NZ_CP174518
Coordinates   1104131..1104598 (+) Length   155 a.a.
NCBI ID   WP_366967625.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1099131..1109598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS05420 degU 1100315..1101004 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACJED4_RS05425 - 1101216..1102058 (+) 843 WP_007499966.1 DegV family protein -
  ACJED4_RS05430 comFA 1102178..1103557 (+) 1380 WP_407969001.1 DEAD/DEAH box helicase Machinery gene
  ACJED4_RS05435 - 1103622..1103915 (+) 294 WP_008348267.1 late competence development ComFB family protein -
  ACJED4_RS05440 - 1103942..1104031 (+) 90 Protein_1037 ComF family protein -
  ACJED4_RS05445 comFC 1104131..1104598 (+) 468 WP_366967625.1 ComF family protein Machinery gene
  ACJED4_RS05450 - 1104655..1105074 (+) 420 WP_407969002.1 TIGR03826 family flagellar region protein -
  ACJED4_RS05455 flgM 1105154..1105417 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJED4_RS05460 - 1105436..1105918 (+) 483 WP_007499977.1 flagellar protein FlgN -
  ACJED4_RS05465 flgK 1105934..1107454 (+) 1521 WP_138826534.1 flagellar hook-associated protein FlgK -
  ACJED4_RS05470 flgL 1107463..1108374 (+) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  ACJED4_RS05475 - 1108421..1108999 (+) 579 WP_035701576.1 DUF6470 family protein -
  ACJED4_RS05480 fliW 1109028..1109462 (+) 435 WP_017368139.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17657.71 Da        Isoelectric Point: 10.7120

>NTDB_id=1077637 ACJED4_RS05445 WP_366967625.1 1104131..1104598(+) (comFC) [Bacillus altitudinis strain G03]
MNRSVYAYNDFMKDILARFKFRGDTALADLFKKDVQLAFKRSFSIKEPVLVPIPLSKESLKERGFNQSIMLASMLGGPIL
EPLIKVHQSKQSKKRKNERLHQQNFFQLRQANPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 468 bp        

>NTDB_id=1077637 ACJED4_RS05445 WP_366967625.1 1104131..1104598(+) (comFC) [Bacillus altitudinis strain G03]
ATGAATCGATCTGTTTATGCTTACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTT
AGCTGATCTATTTAAAAAAGATGTACAGTTAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTGCTTGTCCCAATTC
CTTTGAGTAAAGAGAGTTTAAAGGAAAGAGGATTCAATCAGTCAATCATGCTTGCTTCCATGCTTGGCGGACCTATATTG
GAGCCACTTATAAAAGTACATCAAAGCAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTTTTCCA
ATTAAGGCAGGCAAATCCGATCGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATC
ATGCAGCAAAAATTTTAAAAGACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(83-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

54.194

100

0.542
  comFC/cflB Streptococcus mitis NCTC 12261

40.523

98.71

0.4
  comFC/cflB Streptococcus mitis SK321

40.523

98.71

0.4
  comFC/cflB Streptococcus pneumoniae TIGR4

39.869

98.71

0.394
  comFC/cflB Streptococcus pneumoniae Rx1

39.869

98.71

0.394
  comFC/cflB Streptococcus pneumoniae D39

39.869

98.71

0.394
  comFC/cflB Streptococcus pneumoniae R6

39.869

98.71

0.394
  comFC Lactococcus lactis subsp. cremoris KW2

41.958

92.258

0.387

Multiple sequence alignment