Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACJED4_RS05420 Genome accession   NZ_CP174518
Coordinates   1100315..1101004 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain G03     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1095315..1106004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS05400 - 1095998..1097065 (+) 1068 WP_007499956.1 glycosyltransferase family 4 protein -
  ACJED4_RS05405 - 1097103..1098200 (-) 1098 WP_407968999.1 LCP family protein -
  ACJED4_RS05410 - 1098185..1098853 (-) 669 WP_236810098.1 YigZ family protein -
  ACJED4_RS05415 degS 1099075..1100250 (+) 1176 WP_407969000.1 sensor histidine kinase Regulator
  ACJED4_RS05420 degU 1100315..1101004 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACJED4_RS05425 - 1101216..1102058 (+) 843 WP_007499966.1 DegV family protein -
  ACJED4_RS05430 comFA 1102178..1103557 (+) 1380 WP_407969001.1 DEAD/DEAH box helicase Machinery gene
  ACJED4_RS05435 - 1103622..1103915 (+) 294 WP_008348267.1 late competence development ComFB family protein -
  ACJED4_RS05440 - 1103942..1104031 (+) 90 Protein_1037 ComF family protein -
  ACJED4_RS05445 comFC 1104131..1104598 (+) 468 WP_366967625.1 ComF family protein Machinery gene
  ACJED4_RS05450 - 1104655..1105074 (+) 420 WP_407969002.1 TIGR03826 family flagellar region protein -
  ACJED4_RS05455 flgM 1105154..1105417 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJED4_RS05460 - 1105436..1105918 (+) 483 WP_007499977.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1077635 ACJED4_RS05420 WP_008348273.1 1100315..1101004(+) (degU) [Bacillus altitudinis strain G03]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1077635 ACJED4_RS05420 WP_008348273.1 1100315..1101004(+) (degU) [Bacillus altitudinis strain G03]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment