Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACJED4_RS05430 Genome accession   NZ_CP174518
Coordinates   1102178..1103557 (+) Length   459 a.a.
NCBI ID   WP_407969001.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1097178..1108557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS05410 - 1098185..1098853 (-) 669 WP_236810098.1 YigZ family protein -
  ACJED4_RS05415 degS 1099075..1100250 (+) 1176 WP_407969000.1 sensor histidine kinase Regulator
  ACJED4_RS05420 degU 1100315..1101004 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACJED4_RS05425 - 1101216..1102058 (+) 843 WP_007499966.1 DegV family protein -
  ACJED4_RS05430 comFA 1102178..1103557 (+) 1380 WP_407969001.1 DEAD/DEAH box helicase Machinery gene
  ACJED4_RS05435 - 1103622..1103915 (+) 294 WP_008348267.1 late competence development ComFB family protein -
  ACJED4_RS05440 - 1103942..1104031 (+) 90 Protein_1037 ComF family protein -
  ACJED4_RS05445 comFC 1104131..1104598 (+) 468 WP_366967625.1 ComF family protein Machinery gene
  ACJED4_RS05450 - 1104655..1105074 (+) 420 WP_407969002.1 TIGR03826 family flagellar region protein -
  ACJED4_RS05455 flgM 1105154..1105417 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJED4_RS05460 - 1105436..1105918 (+) 483 WP_007499977.1 flagellar protein FlgN -
  ACJED4_RS05465 flgK 1105934..1107454 (+) 1521 WP_138826534.1 flagellar hook-associated protein FlgK -
  ACJED4_RS05470 flgL 1107463..1108374 (+) 912 WP_008348257.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52525.21 Da        Isoelectric Point: 10.0232

>NTDB_id=1077636 ACJED4_RS05430 WP_407969001.1 1102178..1103557(+) (comFA) [Bacillus altitudinis strain G03]
MNLEKAMELSHKLQSRHLLPIECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNKRYFALSPCETCKKECVYC
RSCIMLGKVSECGFLYEWAGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQNVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1077636 ACJED4_RS05430 WP_407969001.1 1102178..1103557(+) (comFA) [Bacillus altitudinis strain G03]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCATCTTCTTCCTATTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCTGTCGATAGAGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGAATGTGTATACTGT
AGATCCTGCATCATGCTAGGAAAAGTAAGTGAATGTGGCTTTCTTTACGAATGGGCGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGTTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTCGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCTTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTTTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAAAATGTAAATGTACAGGGTGTTTCTGCCGATGATCAAGAAAGGAAACAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGACGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAGGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGCTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508

Multiple sequence alignment