Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LRH_RS04475 Genome accession   NZ_CP174514
Coordinates   913566..914807 (+) Length   413 a.a.
NCBI ID   WP_005688185.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus HN001     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 908566..919807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRH_RS04455 (LRH_04455) yfmH 909706..910998 (+) 1293 WP_005688178.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LRH_RS04460 (LRH_04460) ymfI 910998..911726 (+) 729 WP_005688180.1 elongation factor P 5-aminopentanone reductase -
  LRH_RS04465 (LRH_04465) - 911813..912748 (+) 936 WP_005688181.1 helix-turn-helix domain-containing protein -
  LRH_RS04470 (LRH_04470) pgsA 912745..913338 (+) 594 WP_005688184.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LRH_RS04475 (LRH_04475) cinA 913566..914807 (+) 1242 WP_005688185.1 competence/damage-inducible protein A Machinery gene
  LRH_RS04480 (LRH_04480) recA 914859..915911 (+) 1053 WP_005688187.1 recombinase RecA Machinery gene
  LRH_RS04485 (LRH_04485) rny 916536..918107 (+) 1572 WP_005684479.1 ribonuclease Y -
  LRH_RS04490 (LRH_04490) - 918196..918849 (-) 654 WP_005684481.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44398.04 Da        Isoelectric Point: 7.2503

>NTDB_id=1077574 LRH_RS04475 WP_005688185.1 913566..914807(+) (cinA) [Lacticaseibacillus rhamnosus HN001]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDAGAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDRLEGQPAGTVWIGLAQLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1077574 LRH_RS04475 WP_005688185.1 913566..914807(+) (cinA) [Lacticaseibacillus rhamnosus HN001]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATCACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGGCGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCCAAGGCGCAATCGTACTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCAATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAGGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACGGACTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACCTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCAAAACTTGAGCCAATGATT
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCTCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGCCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CTGGGGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCC
CGTCAACTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAGGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCAGTTAGGGGAGAAACCAATAGCACAGGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.257

100

0.533
  cinA Streptococcus mitis NCTC 12261

52.257

100

0.533
  cinA Streptococcus pneumoniae TIGR4

51.781

100

0.528
  cinA Streptococcus pneumoniae Rx1

51.306

100

0.523
  cinA Streptococcus pneumoniae R6

51.306

100

0.523
  cinA Streptococcus pneumoniae D39

51.069

100

0.521
  cinA Streptococcus mutans UA159

51.442

100

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

44.66

99.758

0.446
  cinA Streptococcus suis isolate S10

41.799

91.525

0.383

Multiple sequence alignment