Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACJJU9_RS03795 Genome accession   NZ_CP174501
Coordinates   808159..809376 (-) Length   405 a.a.
NCBI ID   WP_407730086.1    Uniprot ID   -
Organism   Pseudomonas helleri strain NF1a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 803159..814376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJU9_RS03770 (ACJJU9_03770) - 804171..805472 (-) 1302 WP_048388052.1 NAD(P)/FAD-dependent oxidoreductase -
  ACJJU9_RS03775 (ACJJU9_03775) - 805756..806385 (-) 630 WP_048367338.1 DUF1780 domain-containing protein -
  ACJJU9_RS03780 (ACJJU9_03780) yacG 806468..806674 (-) 207 WP_048367331.1 DNA gyrase inhibitor YacG -
  ACJJU9_RS03785 (ACJJU9_03785) coaE 806671..807294 (-) 624 WP_048388050.1 dephospho-CoA kinase -
  ACJJU9_RS03790 (ACJJU9_03790) - 807296..808162 (-) 867 WP_407730085.1 prepilin peptidase -
  ACJJU9_RS03795 (ACJJU9_03795) pilC 808159..809376 (-) 1218 WP_407730086.1 type II secretion system F family protein Machinery gene
  ACJJU9_RS03800 (ACJJU9_03800) - 809597..810007 (+) 411 WP_227024818.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACJJU9_RS03805 (ACJJU9_03805) - 810092..811588 (+) 1497 WP_407730087.1 AlkA N-terminal domain-containing protein -
  ACJJU9_RS03810 (ACJJU9_03810) - 811585..812082 (+) 498 WP_407730088.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ACJJU9_RS03815 (ACJJU9_03815) nadC 812165..813013 (-) 849 WP_353231516.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43864.72 Da        Isoelectric Point: 10.2203

>NTDB_id=1077366 ACJJU9_RS03795 WP_407730086.1 808159..809376(-) (pilC) [Pseudomonas helleri strain NF1a]
MATQPVKTAVYRWEGTDLKGTPVSGETSAQSLAMIRVQLRRQGITAGKIRRHSDREPRRGKSITALEISLFTRQLATLIK
AGIPLLQALEVIAKGFEHMTMRQLVGELKQDISAGINLATALRKKPAHFDALFCNLVDAGEQAGALDVVLQRVAAYKEKT
EALKKKIKKAMTYPSAVVLVALVVSAILLIKVVPQFQGVFSSFDAQLPAFTLAVIALSEMLTQHGAWLFGGGCLIFFALG
HRYKRSEALRQRVDRWLLKLPVIGSLLRLSAIAHFARTLATTLAAGVPLLEALRAVAGATGNHVYKEAVLRLQQHVATGS
QIHVAMGATGLFPGMAIQMTAIGEESGTLDDMLNHVATYYESEVDSVVDNLTTLMEPLIMTVLGVLVGGLVIAMYLPIFK
LGHVI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1077366 ACJJU9_RS03795 WP_407730086.1 808159..809376(-) (pilC) [Pseudomonas helleri strain NF1a]
ATGGCAACACAGCCAGTTAAAACCGCGGTGTACCGTTGGGAAGGCACCGACCTCAAGGGCACCCCTGTGAGCGGCGAAAC
CAGTGCCCAAAGCTTGGCCATGATCCGCGTTCAGCTACGCCGCCAAGGTATTACCGCAGGTAAAATCCGCCGTCATAGTG
ACCGCGAGCCGCGCAGGGGCAAATCGATCACTGCGCTGGAGATCTCACTGTTTACCCGCCAACTGGCCACGCTGATCAAA
GCGGGCATCCCGCTGCTGCAAGCCCTTGAGGTCATCGCCAAAGGCTTCGAGCACATGACCATGCGCCAATTGGTCGGCGA
GCTGAAGCAGGACATCAGCGCGGGCATCAACCTGGCCACGGCGCTGCGCAAAAAACCGGCGCATTTCGATGCGCTGTTTT
GCAATCTTGTCGACGCAGGCGAGCAGGCCGGTGCTCTGGATGTCGTGCTGCAACGGGTGGCGGCCTACAAAGAAAAAACC
GAAGCCCTGAAAAAGAAGATCAAAAAGGCCATGACCTACCCCAGCGCCGTGGTGCTGGTGGCACTGGTGGTCAGCGCCAT
TCTGTTGATAAAGGTGGTACCGCAGTTTCAAGGCGTGTTCAGTTCTTTTGATGCCCAATTGCCCGCCTTCACCCTGGCGG
TGATCGCTTTATCCGAAATGCTGACGCAACACGGCGCTTGGCTGTTTGGCGGTGGCTGCCTGATTTTTTTCGCGCTTGGC
CATCGCTATAAACGCTCTGAAGCCCTGCGCCAGCGGGTTGATCGATGGCTGCTGAAACTGCCAGTTATCGGCAGCTTGCT
GCGGTTGTCAGCCATCGCCCACTTTGCCCGCACGCTGGCCACCACCCTGGCGGCCGGTGTTCCGCTGCTCGAGGCCTTGC
GCGCCGTTGCTGGTGCGACGGGCAATCACGTGTACAAAGAGGCGGTGCTCAGGCTCCAGCAGCACGTGGCAACCGGTAGC
CAAATTCATGTGGCCATGGGCGCGACGGGCTTATTTCCGGGCATGGCGATTCAGATGACAGCAATTGGCGAAGAATCCGG
CACATTGGATGACATGCTCAATCACGTCGCCACCTATTATGAGAGCGAGGTCGACAGTGTGGTCGACAACCTGACAACGT
TGATGGAGCCGCTGATCATGACGGTTCTCGGCGTTTTGGTGGGCGGGCTGGTGATCGCCATGTATTTACCGATTTTCAAA
CTGGGCCATGTCATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.618

100

0.57
  pilC Acinetobacter baylyi ADP1

52.488

99.259

0.521
  pilC Legionella pneumophila strain ERS1305867

51.493

99.259

0.511
  pilC Acinetobacter baumannii D1279779

52.141

98.025

0.511
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilG Neisseria gonorrhoeae MS11

42.078

95.062

0.4
  pilG Neisseria meningitidis 44/76-A

41.538

96.296

0.4
  pilC Vibrio campbellii strain DS40M4

39.394

97.778

0.385
  pilC Thermus thermophilus HB27

37.376

99.753

0.373

Multiple sequence alignment