Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACI5QO_RS01525 Genome accession   NZ_CP174495
Coordinates   324527..325771 (+) Length   414 a.a.
NCBI ID   WP_343438364.1    Uniprot ID   -
Organism   Enterococcus faecalis strain Ms-MYP-47     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 319527..330771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI5QO_RS01500 (ACI5QO_00295) - 320516..321307 (-) 792 WP_002354848.1 hypothetical protein -
  ACI5QO_RS01505 (ACI5QO_00296) - 321471..321854 (+) 384 WP_002358999.1 YccF domain-containing protein -
  ACI5QO_RS01510 (ACI5QO_00297) - 321943..322368 (+) 426 WP_002383201.1 Rrf2 family transcriptional regulator -
  ACI5QO_RS01515 (ACI5QO_00298) - 322427..323056 (+) 630 WP_002354854.1 NAD(P)-dependent oxidoreductase -
  ACI5QO_RS01520 (ACI5QO_00299) - 323136..324335 (-) 1200 WP_002370127.1 hypothetical protein -
  ACI5QO_RS01525 (ACI5QO_00300) cinA 324527..325771 (+) 1245 WP_343438364.1 competence/damage-inducible protein A Machinery gene
  ACI5QO_RS01530 (ACI5QO_00301) recA 325885..326931 (+) 1047 WP_002354860.1 recombinase RecA Machinery gene
  ACI5QO_RS01535 (ACI5QO_00302) rny 327328..328884 (+) 1557 WP_407717707.1 ribonuclease Y -
  ACI5QO_RS01540 (ACI5QO_00303) - 329044..329841 (+) 798 WP_002354864.1 TIGR00282 family metallophosphoesterase -
  ACI5QO_RS01545 (ACI5QO_00304) - 329915..330301 (+) 387 WP_002359008.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45182.27 Da        Isoelectric Point: 4.7172

>NTDB_id=1077299 ACI5QO_RS01525 WP_343438364.1 324527..325771(+) (cinA) [Enterococcus faecalis strain Ms-MYP-47]
MKAEIIAVGTELLLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQRSDLIVLCGGLGPTEDDLTKQV
VAQHLHKSLVEDQEGLNRLHQFFQQSKRPMTENNLRQVLAIEGGQVLQNPTGLAVGSFVTEGTTSYLLLPGPPNELIPMF
QQAARPLLINAFPQEEQLISRVLRFYGIGESQLVTEIQSLIAHQTNPTIAPYAKPNEVTLRLTVKTKDLVAGEELLTATE
EKVLAKVGDYFYGYGDDNSLAKVTVDLLLQNGQTVTAAESLTAGLFQSTLGEIAGASKIFKGGFVTYSQETKENFLGISH
ELLEEHGTVSEACAKEMAEKARQLAKSNYGLSFTGVAGDPIEGQSTGTVWIGLAEEGQPTVAECFHFNRDRNYIRQSAVM
RGLDLLRRRIINKK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1077299 ACI5QO_RS01525 WP_343438364.1 324527..325771(+) (cinA) [Enterococcus faecalis strain Ms-MYP-47]
ATGAAAGCAGAAATCATTGCAGTCGGAACAGAGTTATTACTGGGACAAGTAGTGAATACCAACGCCACCTTTTTATCAGA
AGAGTTAGCTGCGCTAGGCATCGATGTTTACTATCAGACCGTTGTTGGTGATAACGGCGGCCGCTTAGAAACGCTACTAA
CAGAAGCAGAACAAAGAAGTGATTTAATTGTCCTTTGTGGAGGGCTAGGACCTACAGAAGACGATTTAACCAAGCAAGTT
GTCGCACAACATCTCCATAAATCATTAGTAGAAGATCAAGAAGGATTGAACCGCTTACACCAGTTTTTCCAACAGTCTAA
GCGGCCAATGACGGAAAATAATCTACGACAAGTGTTAGCCATTGAAGGTGGACAAGTCCTTCAAAACCCGACAGGATTAG
CGGTTGGTTCTTTCGTAACAGAAGGCACAACAAGCTATTTGCTCTTACCAGGGCCGCCCAATGAATTAATTCCGATGTTC
CAACAAGCGGCACGACCTTTATTGATTAATGCGTTTCCACAAGAAGAACAATTGATTTCAAGAGTCTTGCGTTTTTATGG
CATTGGTGAATCACAGCTGGTGACCGAGATTCAATCGTTGATTGCGCACCAAACGAATCCAACCATTGCGCCTTATGCTA
AGCCTAATGAAGTGACACTTCGTTTAACAGTTAAAACAAAAGACTTAGTAGCTGGCGAAGAATTATTAACAGCGACGGAA
GAAAAGGTTTTAGCTAAAGTGGGAGACTATTTTTATGGGTATGGGGATGACAATAGTTTAGCCAAGGTAACAGTGGATTT
GTTATTACAAAACGGGCAAACCGTCACGGCTGCTGAGAGCCTCACTGCTGGCCTATTCCAAAGTACACTGGGGGAAATTG
CGGGTGCTTCGAAGATTTTTAAGGGAGGCTTCGTGACGTATTCGCAAGAAACAAAAGAGAACTTTTTAGGAATTTCTCAT
GAACTTTTAGAAGAACATGGCACGGTAAGTGAAGCGTGTGCCAAAGAAATGGCAGAGAAAGCGCGTCAGTTAGCTAAATC
TAACTATGGTTTATCATTTACTGGGGTCGCTGGTGACCCAATCGAAGGTCAATCGACAGGCACTGTTTGGATTGGGCTGG
CGGAAGAAGGCCAACCAACCGTTGCAGAATGTTTCCATTTTAACCGTGACCGAAATTATATTAGACAGAGTGCGGTTATG
CGAGGGTTAGATCTTTTGCGGCGCCGAATCATTAATAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

52.153

100

0.527
  cinA Streptococcus mitis SK321

51.3

100

0.524
  cinA Streptococcus mitis NCTC 12261

51.064

100

0.522
  cinA Streptococcus pneumoniae TIGR4

50.355

100

0.514
  cinA Streptococcus pneumoniae D39

50.118

100

0.512
  cinA Streptococcus pneumoniae Rx1

49.882

100

0.51
  cinA Streptococcus pneumoniae R6

49.882

100

0.51
  cinA Bacillus subtilis subsp. subtilis str. 168

48.522

98.068

0.476
  cinA Streptococcus suis isolate S10

44.039

99.275

0.437

Multiple sequence alignment