Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI3ES_RS08245 Genome accession   NZ_CP174386
Coordinates   1655019..1655465 (-) Length   148 a.a.
NCBI ID   WP_114667516.1    Uniprot ID   -
Organism   Leuconostoc falkenbergense strain SAEED 24451     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1623129..1662822 1655019..1655465 within 0


Gene organization within MGE regions


Location: 1623129..1662822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3ES_RS08015 - 1623129..1623329 (-) 201 WP_114667104.1 cold-shock protein -
  ACI3ES_RS08020 - 1623600..1623755 (-) 156 WP_181809846.1 hypothetical protein -
  ACI3ES_RS08025 - 1623765..1624664 (-) 900 WP_142511783.1 N-acetylmuramoyl-L-alanine amidase -
  ACI3ES_RS08030 - 1624661..1625125 (-) 465 WP_114667106.1 phage holin family protein -
  ACI3ES_RS08035 - 1625130..1625366 (-) 237 WP_142511782.1 hypothetical protein -
  ACI3ES_RS08040 - 1625369..1625497 (-) 129 WP_258552057.1 hypothetical protein -
  ACI3ES_RS08045 - 1625499..1631096 (-) 5598 WP_407631965.1 phage tail spike protein -
  ACI3ES_RS08050 - 1631093..1631899 (-) 807 WP_317211282.1 distal tail protein Dit -
  ACI3ES_RS08055 - 1631918..1633342 (-) 1425 WP_407631966.1 hypothetical protein -
  ACI3ES_RS08060 - 1633384..1635192 (-) 1809 WP_242029690.1 tape measure protein -
  ACI3ES_RS08065 - 1635193..1635525 (-) 333 WP_242029689.1 hypothetical protein -
  ACI3ES_RS08070 - 1635621..1635959 (-) 339 WP_004912507.1 tail assembly chaperone -
  ACI3ES_RS08075 - 1636013..1636597 (-) 585 WP_188353846.1 phage major tail protein, TP901-1 family -
  ACI3ES_RS08080 - 1636611..1637006 (-) 396 WP_142511778.1 DUF3168 domain-containing protein -
  ACI3ES_RS08085 - 1637003..1637362 (-) 360 WP_188353845.1 HK97-gp10 family putative phage morphogenesis protein -
  ACI3ES_RS08090 - 1637355..1637666 (-) 312 WP_142511776.1 hypothetical protein -
  ACI3ES_RS08095 - 1637675..1638013 (-) 339 WP_114667753.1 phage head-tail connector protein -
  ACI3ES_RS08100 - 1638077..1638337 (-) 261 WP_242029688.1 Ig-like domain-containing protein -
  ACI3ES_RS08105 - 1638330..1639160 (-) 831 WP_142511775.1 N4-gp56 family major capsid protein -
  ACI3ES_RS08110 - 1639165..1639758 (-) 594 WP_142511774.1 DUF4355 domain-containing protein -
  ACI3ES_RS08115 - 1639927..1640865 (-) 939 WP_142511773.1 minor capsid protein -
  ACI3ES_RS08120 - 1640846..1642351 (-) 1506 WP_188353844.1 phage portal protein -
  ACI3ES_RS08125 - 1642362..1643654 (-) 1293 WP_142511771.1 PBSX family phage terminase large subunit -
  ACI3ES_RS08130 - 1643644..1644405 (-) 762 WP_114667537.1 terminase small subunit -
  ACI3ES_RS08135 - 1644441..1644836 (-) 396 WP_114667536.1 hypothetical protein -
  ACI3ES_RS08140 - 1644967..1645602 (-) 636 WP_114667535.1 hypothetical protein -
  ACI3ES_RS08145 - 1645655..1645834 (-) 180 WP_114667534.1 hypothetical protein -
  ACI3ES_RS08150 - 1645831..1646037 (-) 207 WP_114667533.1 hypothetical protein -
  ACI3ES_RS08155 - 1646048..1647259 (-) 1212 WP_142511770.1 helix-turn-helix domain-containing protein -
  ACI3ES_RS08160 - 1647259..1647429 (-) 171 WP_185912988.1 hypothetical protein -
  ACI3ES_RS08165 - 1647750..1647938 (-) 189 WP_114667531.1 hypothetical protein -
  ACI3ES_RS08170 - 1648299..1648748 (-) 450 WP_242029685.1 hypothetical protein -
  ACI3ES_RS08175 - 1649099..1649497 (-) 399 WP_407631967.1 hypothetical protein -
  ACI3ES_RS08180 - 1649876..1650238 (-) 363 WP_242029683.1 YopX family protein -
  ACI3ES_RS08185 - 1650241..1650528 (-) 288 WP_114667527.1 hypothetical protein -
  ACI3ES_RS08190 - 1650525..1650725 (-) 201 WP_114667526.1 hypothetical protein -
  ACI3ES_RS08195 - 1650722..1651003 (-) 282 WP_114667525.1 hypothetical protein -
  ACI3ES_RS08200 - 1651008..1651166 (-) 159 WP_188353843.1 hypothetical protein -
  ACI3ES_RS08205 - 1651135..1651596 (-) 462 WP_114667523.1 RusA family crossover junction endodeoxyribonuclease -
  ACI3ES_RS08210 - 1651593..1652006 (-) 414 WP_142511416.1 hypothetical protein -
  ACI3ES_RS08215 - 1652116..1652319 (-) 204 WP_114667522.1 hypothetical protein -
  ACI3ES_RS08220 - 1652322..1653023 (-) 702 WP_114667520.1 putative HNHc nuclease -
  ACI3ES_RS08225 - 1653028..1653213 (-) 186 WP_114667519.1 helix-turn-helix domain-containing protein -
  ACI3ES_RS08230 - 1653650..1653916 (-) 267 WP_142511415.1 hypothetical protein -
  ACI3ES_RS08235 - 1653886..1654686 (-) 801 WP_142511414.1 helix-turn-helix domain-containing protein -
  ACI3ES_RS08240 - 1654702..1655007 (-) 306 WP_114667517.1 hypothetical protein -
  ACI3ES_RS08245 ssb 1655019..1655465 (-) 447 WP_114667516.1 single-stranded DNA-binding protein Machinery gene
  ACI3ES_RS08250 - 1655465..1656094 (-) 630 WP_242029681.1 ERF family protein -
  ACI3ES_RS08255 - 1656094..1656999 (-) 906 Protein_1601 DUF1351 domain-containing protein -
  ACI3ES_RS08260 - 1657002..1657211 (-) 210 WP_142511412.1 hypothetical protein -
  ACI3ES_RS08265 - 1657208..1657405 (-) 198 WP_114667510.1 helix-turn-helix transcriptional regulator -
  ACI3ES_RS08270 - 1657514..1657669 (-) 156 WP_181809872.1 hypothetical protein -
  ACI3ES_RS08275 - 1657671..1657838 (-) 168 WP_181809871.1 hypothetical protein -
  ACI3ES_RS08280 - 1657848..1658579 (-) 732 WP_142511411.1 phage antirepressor KilAC domain-containing protein -
  ACI3ES_RS08285 - 1658585..1658827 (-) 243 WP_114667506.1 hypothetical protein -
  ACI3ES_RS08290 - 1658909..1659064 (-) 156 WP_407631968.1 hypothetical protein -
  ACI3ES_RS08295 - 1659065..1659523 (-) 459 WP_142511410.1 DNA N-6-adenine-methyltransferase -
  ACI3ES_RS08300 - 1659516..1659725 (-) 210 WP_114667503.1 hypothetical protein -
  ACI3ES_RS08305 - 1659791..1660018 (-) 228 WP_407631969.1 helix-turn-helix transcriptional regulator -
  ACI3ES_RS08310 - 1660171..1660857 (+) 687 WP_114667500.1 XRE family transcriptional regulator -
  ACI3ES_RS08315 - 1660923..1661477 (+) 555 WP_114667498.1 Ltp family lipoprotein -
  ACI3ES_RS08320 - 1661776..1662822 (+) 1047 WP_114667497.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16177.95 Da        Isoelectric Point: 5.2440

>NTDB_id=1077026 ACI3ES_RS08245 WP_114667516.1 1655019..1655465(-) (ssb) [Leuconostoc falkenbergense strain SAEED 24451]
MINRVVLIGRLTKDVEVRYTQSGVAVGTLSLAVNRPFTNASGEREADFINGVIWRKAAENFANFTHKGALVAIEGRLQTR
NYEDGNGKRVYVTEVVADNFSLLEKKSDGQQSAPKSQAPDPFANQGNQNKFAGSGNTEIDISDDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1077026 ACI3ES_RS08245 WP_114667516.1 1655019..1655465(-) (ssb) [Leuconostoc falkenbergense strain SAEED 24451]
ATGATTAACAGAGTAGTGCTCATTGGTCGATTGACCAAAGATGTTGAAGTTAGATACACACAATCAGGTGTGGCAGTTGG
AACATTAAGTTTAGCGGTTAATCGTCCATTTACGAATGCTAGTGGCGAACGTGAAGCGGACTTTATCAACGGTGTTATCT
GGCGCAAAGCAGCCGAAAACTTCGCTAACTTCACACACAAAGGTGCGCTAGTGGCGATTGAGGGACGGTTGCAAACACGC
AACTACGAAGACGGAAACGGCAAGCGTGTTTATGTCACAGAGGTTGTAGCTGATAATTTCAGTTTGTTGGAAAAGAAGAG
TGATGGTCAGCAATCAGCACCGAAGTCACAGGCACCTGATCCATTCGCAAATCAAGGCAATCAAAATAAATTTGCTGGTA
GTGGCAACACTGAAATTGACATTTCAGATGACGATTTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.669
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.757

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.667

81.081

0.419
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.865

100

0.399
  ssbB/cilA Streptococcus mitis NCTC 12261

36.486

100

0.365
  ssbB/cilA Streptococcus pneumoniae TIGR4

36.486

100

0.365
  ssb Glaesserella parasuis strain SC1401

30.508

100

0.365

Multiple sequence alignment